Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0926 ATGCAGGAAACTAAGGACCCTGCAATTAAGCTCTTCGGCCAGAAGATTCCTTTCCCCGGTGAAGCAGAGGTTCCTGCCATTGCCGGCGGCCAAACTGTCTCGCCGGCAGCGATGGATGTGGACAAAGAGATAGAGGAAGAAGAGGAAGACGTTGGAGAGTCAGAATCTGAAGAAGAGAAAGACCAAGGAGATAAGGATCCACGAGCTGAAAAAGTTACTGAGAAAAAGAAAGAGGCTGATCCTCCTCCAAATGGTGCAGAGACAAAGAAGACTTCAGAGGGTATTCAGAACCCAAAGACACCATCCATAGACGAAGAGACTGCAAAGTCAAAAAACGGCAAGTCAGAGAATGAGCAAAGTGATGCAACCAACAACAATGAGAACAACACCAAAACACTGAAGAAGCCAGATAAAATACTCCCATGTCCACGCTGCAACAGCATGGACACAAAGTTCTGTTACTACAACAACTACAACATTAACCAGCCTCGTTATTTCTGCAAAGCGTGTCAAAGATACTGGACCGCGGGTGGAACCATGAGGAACGTGCCTGTTGGGGCAGGAAGAAGAAAGAACAAGAACTCTGCCTCGCATTATCGCCACATTACAATCTCTGAGGCCCTTCAAGCCGCTAGAATTGATGCCCCTAATGGGACTCATTTACCCACTTTGAAAACCAATGGAAGAGTCCTCAGCTTTGGCTTAGACCCACCAATTTGCGATTCCATGGCATCGGTCCTTAATCTAGCAGAGAAAAAAGTTCTTAATGCCACGCGGAACGGGTTTCATACTGCTGAAGATCAGAGAGTTCACAAAAACGGAGAAAATAATGGCGATGACTGCTCAAGTGTGTCTTCCATTACGGTTTCAAATTCCATTGAAGAAAGTGGCAAAAACGGGTCACAGGAATCCTTGTTACAGAATAATAATAATAATAATTTCGCTCCTCATGTCTCGTGCATTTCTAGTGTTCCTTGGCCTTATCCTTGGAATTCTGCAGTTCCTTCGCCTCCAGCTATGTGTCCTCCCGGGTTTCCTATGTCATTCTACCCTGCATTTTGGAACTGTGGGGTGCCAGGGAATTGGAATATTCCGTGGTTTCCCTCGCATCCTTCAGTTCCAAACCCTAGGTCTCCAACCTCTGCTCCAAATTCTCCCACCCTAGGGAAACACTCCAGAGATGATGACTTTACTAAAGAAGAGCATTTGCATAAGGAAGAAAGGCAGAGAAATGGGAGCATTTTGGTCCCTAAAACTCTGAGAATTGATGACCCTAGTGAAGCTGCAAAGAGTTCTATATGGGCAACACTAGGGATCAAGAATGAATGTGTGAGCGGAGGCGGCATGTTTAAGGCATTCCAATCAAAGAAAGATGAAAAAGGCCATGTTGTTGAAACATCTCCAGTGTTGAGGGCGAACCCTGCAGCCTTGTCTCGATCCCTTAATTTTCATGAGAATTCTTGA 1464 0.4563 MQETKDPAIKLFGQKIPFPGEAEVPAIAGGQTVSPAAMDVDKEIEEEEEDVGESESEEEKDQGDKDPRAEKVTEKKKEADPPPNGAETKKTSEGIQNPKTPSIDEETAKSKNGKSENEQSDATNNNENNTKTLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSASHYRHITISEALQAARIDAPNGTHLPTLKTNGRVLSFGLDPPICDSMASVLNLAEKKVLNATRNGFHTAEDQRVHKNGENNGDDCSSVSSITVSNSIEESGKNGSQESLLQNNNNNNFAPHVSCISSVPWPYPWNSAVPSPPAMCPPGFPMSFYPAFWNCGVPGNWNIPWFPSHPSVPNPRSPTSAPNSPTLGKHSRDDDFTKEEHLHKEERQRNGSILVPKTLRIDDPSEAAKSSIWATLGIKNECVSGGGMFKAFQSKKDEKGHVVETSPVLRANPAALSRSLNFHENS* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0926 487 MobiDBLite consensus disorder prediction 89 103 - -
Apr1g0926 487 MobiDBLite consensus disorder prediction 277 310 - -
Apr1g0926 487 Coils Coil 37 57 - -
Apr1g0926 487 PANTHER CYCLIC DOF FACTOR 1 1 486 - -
Apr1g0926 487 MobiDBLite consensus disorder prediction 41 60 - -
Apr1g0926 487 MobiDBLite consensus disorder prediction 1 139 - -
Apr1g0926 487 ProSitePatterns Zinc finger Dof-type signature. 142 178 IPR003851 GO:0003677|GO:0006355
Apr1g0926 487 MobiDBLite consensus disorder prediction 373 394 - -
Apr1g0926 487 PANTHER CYCLIC DOF FACTOR 2 1 486 IPR045174 GO:0003700|GO:0006355
Apr1g0926 487 MobiDBLite consensus disorder prediction 61 84 - -
Apr1g0926 487 ProSiteProfiles Zinc finger Dof-type profile. 140 194 IPR003851 GO:0003677|GO:0006355
Apr1g0926 487 Pfam Dof domain, zinc finger 137 194 IPR003851 GO:0003677|GO:0006355
Apr1g0926 487 MobiDBLite consensus disorder prediction 266 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0926 Apr-Chr1 13036060 13039435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0926 1 485 C2C2-Dof Transcription Factor Family AT3G47500 51.509 1.38e-132 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Apr1g0926 zf-Dof 2.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0926 - - gsj:114409713 708.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0926 1 13036060 13039435 Apr9g2996 9 36823350 36827671 ECH
Apr6g0205 6 2161650 2165125 Apr1g0926 1 13036060 13039435 ECH
Apr7g1501 7 22195186 22199330 Apr1g0926 1 13036060 13039435 ECH
Apr3g0924 3 24073471 24077137 Apr1g0926 1 13036060 13039435 ECH
Apr1g0926 1 13036060 13039435 Apr1g0926 1 13036060 13039435 ECH