Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0716 ATGTTCCCACAAATACACAGCATTATTAGCGGTTCTCAGCTAGAGCGTATGTTGCATCAGCTTCCATTGCCGACCCCAATGGAACGATCAACTTCAAGGTGGAAACCAAGTCTTGAGGTAGCACCCAATTGTCCTCGTTGTGCTTCCACCAACACCAAATTCTGCTACTACAACAACTATAGCTTGTCACAACCCAGATATTTCTGCAAAGGTTGCAGGCGTTACTGGACCAAAGGTGGCTCTCTCCGCAACGTTCCCGTCGGTGGTGGCTGCCGCAAAAACCGCCGCGGAAAGTCCTCGAGGCACCACCAAAGCGACAGCGTTTCCATGAATAGCTCTGTTTCTGAGGACAGAGAATCATCAATTTGTAATGGCCAAACCAATGGTTCACGTGACATAGACATGGCTCTCGTGTTCGCCAAATTCTTGAACCAAAAACCCAGTGAGGAACCCGAGAGTGAAGGTAGCAATGGGTCATCGTCTTCCAACAATTACTTTAGATTTGAAACTGAGAATGATACGGTAATCCAAAATAAACCTTTATCTGATCCCATTATGGACCCTGCAATGCTAACAATTGAGAATTTTGGAGCTGAGGAATTGAGTTTTAGTGGGATTGATGAGTTAGAGGGGTTTCTGGGTGGTGATGAAAATGTTCTGTGGGGTGATGATGCTACGGTTACCGTTTCCTCTTCCATTACTTGGGAACCACCCGTTATGCAATTGCAGGAGTTGGAATACTCCATGCCGTTAAATGAGGATGGTCAATTGTTACCCATTAGTTCTTCATCTGCAATGAATTCGATTAGCAACGGTTGGAGTACTTGGAGTTCCTTTGATATTTCAACCATGCAGCAAGTTTTCGAGTCAAGACCTTAA 879 0.4516 MFPQIHSIISGSQLERMLHQLPLPTPMERSTSRWKPSLEVAPNCPRCASTNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGKSSRHHQSDSVSMNSSVSEDRESSICNGQTNGSRDIDMALVFAKFLNQKPSEEPESEGSNGSSSSNNYFRFETENDTVIQNKPLSDPIMDPAMLTIENFGAEELSFSGIDELEGFLGGDENVLWGDDATVTVSSSITWEPPVMQLQELEYSMPLNEDGQLLPISSSSAMNSISNGWSTWSSFDISTMQQVFESRP* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0716 292 ProSitePatterns Zinc finger Dof-type signature. 44 80 IPR003851 GO:0003677|GO:0006355
Apr1g0716 292 MobiDBLite consensus disorder prediction 86 129 - -
Apr1g0716 292 ProSiteProfiles Zinc finger Dof-type profile. 42 96 IPR003851 GO:0003677|GO:0006355
Apr1g0716 292 PANTHER DOF ZINC FINGER PROTEIN DOF1.2 24 260 - -
Apr1g0716 292 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 24 260 IPR045174 GO:0003700|GO:0006355
Apr1g0716 292 MobiDBLite consensus disorder prediction 146 165 - -
Apr1g0716 292 MobiDBLite consensus disorder prediction 104 129 - -
Apr1g0716 292 MobiDBLite consensus disorder prediction 149 165 - -
Apr1g0716 292 Pfam Dof domain, zinc finger 42 96 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0716 Apr-Chr1 8556841 8557719 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0716 27 283 C2C2-Dof Transcription Factor Family AT3G52440 37.319 3.19e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Apr1g0716 zf-Dof 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0716 - - vra:106778892 319.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0016 9 258841 260406 Apr1g0716 1 8556841 8557719 PCT