Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0644 ATGGACACGGCTCAGTGGGCACAGGGGATTGGAGTGGTTAAACCTATGGAAGGTTCAAAGCCTCCTCCTATGTTAGAGAGAAGGGCAAGGCCTCAGAAGGATCAAGCTTTGAACTGCCCAAGGTGCAATTCAACTAACACCAAATTCTGCTACTACAATAACTATAGCCTCTCTCAACCAAGGTACTTTTGCAAGACTTGTAGAAGGTATTGGACTGAGGGTGGCTCTTTGAGAAATGTTCCTGTGGGTGGTGGCTCAAGAAAGAACAAGAGATCAACTCCATCAGCATCGGCACCTGCACCTTCACAATTTCCATCATCAACAAAGAAGCTTCCTGATCTGACAACGCCAAATTTCCCTCAATCTGCTTCTCAGAACCCAAAGATCCACCAAGGCCAAGATCTTAACTTAGCATATCCACCAGCTGAGGACTACAACAGTGTATCTAAGTTTATTGAGGTTCCTTACACCACTGAATTAGACAAGGGTCTTCAAAACCCCACTTCCTCAACATGTTCTTCTCATTTGACCGCTATGGAGCTTCTCAAAACTGGGATTGCTTCATCAAGGAGTCTAAATTCTTTCATGCCCATGTCGTTGTCTGATTCCAATACAATGTATAATTCAACTGGGTTTCCTTTGCAAGACTTCAAGCCAGCTGGACTTAACTTCAATTTAGAGGGGTTTGAAAATGGTTATGGGGCTCTTCAGGGAATTCAAGAGGGTCCTACTGGTGCAAGGATCTTGTTCCCTGTGGAGGATTTGAAGCAGCAGGTTCCGAGCACAAATGAGTTTGATCAGCAAAATAGAAGTCAAGGGGATTCAACTGGGTATTGGAATGGCATGTTAGGTGGAGGATCATGGTAG 867 0.4464 MDTAQWAQGIGVVKPMEGSKPPPMLERRARPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSTPSASAPAPSQFPSSTKKLPDLTTPNFPQSASQNPKIHQGQDLNLAYPPAEDYNSVSKFIEVPYTTELDKGLQNPTSSTCSSHLTAMELLKTGIASSRSLNSFMPMSLSDSNTMYNSTGFPLQDFKPAGLNFNLEGFENGYGALQGIQEGPTGARILFPVEDLKQQVPSTNEFDQQNRSQGDSTGYWNGMLGGGSW* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0644 288 ProSitePatterns Zinc finger Dof-type signature. 39 75 IPR003851 GO:0003677|GO:0006355
Apr1g0644 288 MobiDBLite consensus disorder prediction 78 131 - -
Apr1g0644 288 MobiDBLite consensus disorder prediction 261 278 - -
Apr1g0644 288 PANTHER DOF ZINC FINGER PROTEIN DOF4.6-LIKE 1 285 - -
Apr1g0644 288 MobiDBLite consensus disorder prediction 261 288 - -
Apr1g0644 288 MobiDBLite consensus disorder prediction 1 32 - -
Apr1g0644 288 MobiDBLite consensus disorder prediction 86 131 - -
Apr1g0644 288 Pfam Dof domain, zinc finger 34 91 IPR003851 GO:0003677|GO:0006355
Apr1g0644 288 ProSiteProfiles Zinc finger Dof-type profile. 37 91 IPR003851 GO:0003677|GO:0006355
Apr1g0644 288 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 285 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0644 Apr-Chr1 7727150 7728741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0644 24 288 C2C2-Dof Transcription Factor Family AT3G61850 43.816 4.52e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Apr1g0644 zf-Dof 1.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0644 - - gmx:778114 466.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1202 10 24329983 24331957 Apr1g0644 1 7727150 7728741 ECH
Apr4g0940 4 7647895 7649596 Apr1g0644 1 7727150 7728741 ECH
Apr1g0644 1 7727150 7728741 Apr1g0644 1 7727150 7728741 ECH