Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0176 ATGCCAAATCAAAAGCACGTTTTGCAGAACACTTTCTTCCTCTTGTTACTTTTTCAGGCTTTGATGAACGTGAGTTGTAAATCCACCATAGAGCCATGTTCAAACTCAGACTCATGCAACGCTCTCTTAGGATACACTCTCTACACTGACCTCAAGGTCTCAGAAGTTGCTTCCCTCTTCCAAATCGACCCTATTGCTCTTCTTACTGCTAATGCCATAGACATTTCTTACCCAGACGTTGAACACCATATTCTTCCTTCTAGACTCTTCCTCAAAATCCCCATTTCTTGCTCCTGCGTTGACGGGATTCGCAAATCGGTGTCAACCCATTACAAGACGCGCCCCTCTGATACTCTCTCTTCCATCGCTGACTCTATCTATGGTGGGTTGGTTTCCGCTGACCAGCTCAGAGAGGCCAATTCCATAACCGATCCTTCAGTGTTGGATGTGGGTCAGAACCTTGTTGTGCCTCTTCCTTGCACCTGCTTCAATGGTTCAGATAACTCTCTGCCCGCAATTTACCTCTCTTACGTGGTTCAACCGGTTGATACTTTGGCTGCAATTGCTGCCAGATATTTTACTACTCTCACTGATTTGATGAATGTTAATGCCATGGGAAGCACTGCTATCAACGATGGTGATATCCTTGCTGTTCCAATACCCGCTTGTGCTTCAAATTTTCCAAAGTCTGCCTCTGATTTTGGCTTGCTTGTCCCTAATGGAAGTTATGCCATTACAGCGGGTCATTGTATGCAGTGTAGCTGTGGACCACGAAACCTTAATTTGTACTGTATGCCAGCTTCTCTAGCTGTTTCTTGCTCCAGCATGCAATGTAGGGGAAGCAATCTTATGGTGGGAAATGTTACAGTGCAACAGACTAGTGCTGGTTGCAATGTTACTTCTTGCAATTATGATGGTATTGTTAATGGCACCATAGTCACTATGTTGTCCCCATCTCTTCAGCCTCGATGTCCAGGGTCGCAGGAATTTCCTCCCCTTATTGCCCCACCTACAACTGTTGCAAGAGAATCAATATTTGCACCAGCACCGGCACCGCAGTTTGATGGAGCTGGTCCAACATCACCCAAATCCTCACTGGTTCCTGCAACAGGGCTTCCAGGATTCTCTCCTGCAAATGGCCCTGTCAGCGGGATTTCTTCTGGTGCTTCTGCTGCATGCTCCTTGGTGAAACCATTACCCACTTTGACATCTGCAATTGTGTTATTGCTTGTTAAGTTGATGATACCTGTGGCATTGTAA 1260 0.4595 MPNQKHVLQNTFFLLLLFQALMNVSCKSTIEPCSNSDSCNALLGYTLYTDLKVSEVASLFQIDPIALLTANAIDISYPDVEHHILPSRLFLKIPISCSCVDGIRKSVSTHYKTRPSDTLSSIADSIYGGLVSADQLREANSITDPSVLDVGQNLVVPLPCTCFNGSDNSLPAIYLSYVVQPVDTLAAIAARYFTTLTDLMNVNAMGSTAINDGDILAVPIPACASNFPKSASDFGLLVPNGSYAITAGHCMQCSCGPRNLNLYCMPASLAVSCSSMQCRGSNLMVGNVTVQQTSAGCNVTSCNYDGIVNGTIVTMLSPSLQPRCPGSQEFPPLIAPPTTVARESIFAPAPAPQFDGAGPTSPKSSLVPATGLPGFSPANGPVSGISSGASAACSLVKPLPTLTSAIVLLLVKLMIPVAL* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0176 419 CDD LysM 176 218 IPR018392 -
Apr1g0176 419 SMART LysM_2 176 219 IPR018392 -
Apr1g0176 419 SMART LysM_2 110 157 IPR018392 -
Apr1g0176 419 Gene3D LysM domain 103 163 IPR036779 -
Apr1g0176 419 ProSiteProfiles LysM domain profile. 175 218 IPR018392 -
Apr1g0176 419 Gene3D LysM domain 166 230 IPR036779 -
Apr1g0176 419 SUPERFAMILY LysM domain 175 220 IPR036779 -
Apr1g0176 419 SUPERFAMILY LysM domain 109 158 IPR036779 -
Apr1g0176 419 Pfam LysM domain 111 157 IPR018392 -
Apr1g0176 419 Pfam LysM domain 177 219 IPR018392 -
Apr1g0176 419 CDD LysM 109 156 IPR018392 -
Apr1g0176 419 ProSiteProfiles LysM domain profile. 109 156 IPR018392 -
Apr1g0176 419 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 15 410 - -
Apr1g0176 419 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 3 15 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0176 Apr-Chr1 1988426 1990717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0176 12 394 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 71.318 0.0 564
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0176 - - gmx:100808966 744.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0176 1 1988426 1990717 Apr1g0176 1 1988426 1990717 ECH