Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0161 ATGGACATGGACATGGATACCATCCACGACCTCGACTTCTCCGGATACAGCACCATCACCAACACCAACACCCCCACTTCCGACGACGACTACGCCTGTAACTGGAACCACTGGTCCCCCCTCGTCAACTGGGACACCTTTGCCGGTTCCCAAGACGACTTCCACCACCTCATCGACTCCATCGTCGACGACGCCCTTCACCTCAGCCCCGAGAACGCCCCCACTAACTCCGCCACCATCACGGAGGAAGACGACGTCGACGAAGAAACAGCACCGCCACCAGCACCAACAGGCGACGACTCCAAGGGCCTGAGGCTGGTGCATCTGTTGATGGCTGCGGCGGAGTCCCTCACCGGTGCCACCAAGAGCCGTGACCTGGCTCGAGTGATATTGGTTCGGCTCAAGGAGTTGGTGTCACACGCCCACGGCTCCAACATGGAGAGGCTCGCCGCGTACTTCACGGACGCGCTGCAGGGTCTACTAGAAGGCGCAGGGGGTGCGCACAATAACAACAAGAACTGTTGCATCACTGGCGGGCCCCACCATCGAGACGACCAATATCATCATCAAAACGACATGCTCGCAGCTTTCCAACTGCTCCAGGACATGTCTCCCTACGTCAAGTTCGGACACTTCACCGCCAACCAGGCCATCCTCGAAGCCGTGGCCCACGAACGCCGTGTCCACATCGTCGATTACGACATCATGGAAGGGGTCCAGTGGGCCTCCCTCATGCAGGCCCTAGCCTCCAACAACAACGGCCCACACCTCCGCATCACCGCATTGTCACGAACCGGCACCGGACGGAAATCCATCGCCACCGTGCAAGAGACGGGGCGAAGATTAACGGCGTTCGCCGCCTCTCTTGGACAACCGTTCTCGTTTCACCAGTGTAGATTGGATTCGGACGAAACGTTTCGGCCTTCGACGCTGAAGGTGGTTCGTGGAGAGGCTTTGGTGTTCAACTGCATGCTGAACCTGCCGCATCTGAGTTACCGCACGCCCGATTCAGTTGAATCGTTTTTTAGTGGAGCGAAGGCGTTGAGGCCGAGGCTGGTGACGCTGGTGGAGGAGGAGGTGGGATCCGTTGTGGGAGGGTTCGTGGGGCGCTTCATGGACTCGCTTCACCACTATTCGGCGGTGTTTGACTCGCTGGAGGCTGGGTTTCCGATGCAGAGGCGGGCCAGGGCCTTGGTGGAGCGGGTCTTCTTGGGGCCCCGGATATTGGGGTCTTTGGCCCGGATATACCGAACAGGGGAAGAGGAGGACAGGGGGTCGTGGGGGGAGTGGTTGGGTGCGGAGGGTTTCAGCGGAGTTCCGATAAGCTTCGCCAATCATTGCCAGGCGAAGCTGTTGTTGAGTCTTTTTAACGATGGATATAGGGTGGAGGAATTGGGTTGCAATAAGCTGGTGTTGGATTGGAAATCACGCCGTTTGCTTTCTGCCTCCCTTTGGACTTGTTCTTCTCACTCCGATTAA 1479 0.5828 MDMDMDTIHDLDFSGYSTITNTNTPTSDDDYACNWNHWSPLVNWDTFAGSQDDFHHLIDSIVDDALHLSPENAPTNSATITEEDDVDEETAPPPAPTGDDSKGLRLVHLLMAAAESLTGATKSRDLARVILVRLKELVSHAHGSNMERLAAYFTDALQGLLEGAGGAHNNNKNCCITGGPHHRDDQYHHQNDMLAAFQLLQDMSPYVKFGHFTANQAILEAVAHERRVHIVDYDIMEGVQWASLMQALASNNNGPHLRITALSRTGTGRKSIATVQETGRRLTAFAASLGQPFSFHQCRLDSDETFRPSTLKVVRGEALVFNCMLNLPHLSYRTPDSVESFFSGAKALRPRLVTLVEEEVGSVVGGFVGRFMDSLHHYSAVFDSLEAGFPMQRRARALVERVFLGPRILGSLARIYRTGEEEDRGSWGEWLGAEGFSGVPISFANHCQAKLLLSLFNDGYRVEELGCNKLVLDWKSRRLLSASLWTCSSHSD* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0161 492 MobiDBLite consensus disorder prediction 68 102 - -
Apr1g0161 492 PANTHER SCARECROW-LIKE PROTEIN 26 2 486 IPR030028 -
Apr1g0161 492 ProSiteProfiles GRAS family profile. 97 486 IPR005202 -
Apr1g0161 492 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 2 486 IPR005202 -
Apr1g0161 492 Pfam GRAS domain family 106 486 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0161 Apr-Chr1 1797930 1799408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0161 103 485 GRAS Transcription Factor Family AT3G03450 34.080 9.74e-53 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Apr1g0161 GRAS 2.8e-98 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0161 - - gmx:100782300 741.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0161 1 1797930 1799408 Apr1g0161 1 1797930 1799408 ECH