Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0975 ATGCAAGACCCAACGGCATTCCATCCCATGAAGCCCCAATTCCCTGAACAAGAACAACTCAAATGCCCACGTTGTGAATCCACAAACACCAAATTCTGCTACTACAACAACTACAACCTCTCACAGCCACGCCATTTCTGCAAGAACTGTAGAAGGTATTGGACAAAAGGTGGTGCTTTGAGAAACATCCCAGTTGGGGGTGGAAGCAGAAAGAGCACAAAACGTTCATCAACCTCCAAACGCGCCACACCATCATCATCATCATCACTCTCTTCTGCAGCCCAACCTGGAGCTCCAGAGGCTGACCCGACCCGGGTTTACACCAACCCGGTTGATCAAGACCAAAGGGTGTTAAGCATTGGTGGGAGTTTCAGTTCCCTTTTGGCATCGAATGGGCATTTTGGGGGCCTTTTAGAGGGCCTGAATTCAAATGGGTCAAGTCTAAAAATGGTGCAAATGGGTGAATTTGGGGAGGATGTGAGTTGTGACCCAGTTGTGAATACGGATTCGGGTCCAAATCAGATGCAGAGTAATGGCAGCTCAGAGAGCTTTCTGGGCATGCAAAATGGTGATTCAAGCTGTTGGAATGGTAGCCATGGTTGGTCTGATCTTGCAATATACACACCTGGCTCCAGCTTTCAGTAA 645 0.4822 MQDPTAFHPMKPQFPEQEQLKCPRCESTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKSTKRSSTSKRATPSSSSSLSSAAQPGAPEADPTRVYTNPVDQDQRVLSIGGSFSSLLASNGHFGGLLEGLNSNGSSLKMVQMGEFGEDVSCDPVVNTDSGPNQMQSNGSSESFLGMQNGDSSCWNGSHGWSDLAIYTPGSSFQ* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0975 214 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677|GO:0006355
Apr10g0975 214 MobiDBLite consensus disorder prediction 167 186 - -
Apr10g0975 214 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677|GO:0006355
Apr10g0975 214 PANTHER DOF ZINC FINGER PROTEIN DOF3.1-LIKE 2 214 - -
Apr10g0975 214 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 2 214 IPR045174 GO:0003700|GO:0006355
Apr10g0975 214 MobiDBLite consensus disorder prediction 69 95 - -
Apr10g0975 214 MobiDBLite consensus disorder prediction 61 110 - -
Apr10g0975 214 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0975 Apr-Chr10 22252893 22254180 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0975 11 138 C2C2-Dof Transcription Factor Family AT1G51700 58.571 6.28e-48 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Apr10g0975 zf-Dof 2.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0975 - - gmx:100790822 291.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0975 10 22252893 22254180 Apr10g0975 10 22252893 22254180 ECH