Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3211 ATGGCTTTTTCTTCTCTGCACATCTGCATGGACTCACCAGATCACTGGTTCCAGGGAACAGTTCACGACGAGGTCTCCGGCGGCAGCGGCAGCGGTGGCATGGATTCTTCTGGCTCGCCATTATCCTCCTCCGGCGACATTATGAAATGCTCGGCAAGGCCAATGATGGAGAGAAGAATGAGACCCCCGCACGACCAAGCCCTCAAGTGCCCTCGCTGCGATTCAACCCACACCAAATTCTGTTACTACAACAACTACAGCCTCTCTCAGCCCCGCTATTTCTGCAAGACCTGCAGAAGGTACTGGACTAAAGGCGGCACCCTCCGCAACATCCCCGTCGGCGGCGGCTGCCGGAAAAACAAGAAACTCTCCTCCAATTCCAAGAAACACCACCAATCCAACAACAACAATAATAATGATCTTCATACTTCTCATAATAACAACCAATCACATTCTTATTCTACTTGCCCTAAAGATCTTCAGCTTTCTTTCCCCGATGTCCAATTTTCTCACCTCAGTAACATTATTCTTGGTGGTAACGTTAACCCTAATAATAGTAGCTTCATGGAGAGCAAGTTCCACGTTGGCATGCTTGAGAACAATCTTGTTAGGCCAATCGATTTCATGGAGAACAAGCTTGAAGGCATAATTGGGAGTGGTATTAATAGTTCTAGAAGCTTTGATTTCTTTGGGAATAATAATAGTAATGGCGGCTGCGACGAGAACAGCAATAACAACATCAACATGATGATGCTTGGTATGGCTAATAATGTTGGATTGGGACCTAACAATTTTCATGCACTTAATTGCTCTCCAATTGCATCATTTGGCGGCATGTCATCACTTAATGGCGGCGGTTGCGGCAACAGCAGTGTCAACAACATTGGTAATAGTTATATTATGGATTCTTCATCTTCATGCCATCAGAGAATGATGCTGACATATGATGATGATAATAATAATGCCACGATTGATGTGAAGCCAAACCCTAAGCTTCTTTCCCTTGAATGGCAGGATCATGGTTGTTCTGATGCAGGAAAAGACTCATTTGGGTACCTCCATAGTCATGGATCATGGTCTGGCATGATCAACGGCTATGGTTCCTCCACAACAAACCCTTTGGTTTAA 1128 0.4512 MAFSSLHICMDSPDHWFQGTVHDEVSGGSGSGGMDSSGSPLSSSGDIMKCSARPMMERRMRPPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKLSSNSKKHHQSNNNNNNDLHTSHNNNQSHSYSTCPKDLQLSFPDVQFSHLSNIILGGNVNPNNSSFMESKFHVGMLENNLVRPIDFMENKLEGIIGSGINSSRSFDFFGNNNSNGGCDENSNNNINMMMLGMANNVGLGPNNFHALNCSPIASFGGMSSLNGGGCGNSSVNNIGNSYIMDSSSSCHQRMMLTYDDDNNNATIDVKPNPKLLSLEWQDHGCSDAGKDSFGYLHSHGSWSGMINGYGSSTTNPLV* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3211 375 MobiDBLite consensus disorder prediction 30 46 - -
Amo20g3211 375 MobiDBLite consensus disorder prediction 129 154 - -
Amo20g3211 375 MobiDBLite consensus disorder prediction 113 154 - -
Amo20g3211 375 ProSiteProfiles Zinc finger Dof-type profile. 68 122 IPR003851 GO:0003677|GO:0006355
Amo20g3211 375 ProSitePatterns Zinc finger Dof-type signature. 70 106 IPR003851 GO:0003677|GO:0006355
Amo20g3211 375 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 31 367 IPR045174 GO:0003700|GO:0006355
Amo20g3211 375 MobiDBLite consensus disorder prediction 26 46 - -
Amo20g3211 375 Pfam Dof domain, zinc finger 65 122 IPR003851 GO:0003677|GO:0006355
Amo20g3211 375 PANTHER DOF ZINC FINGER PROTEIN DOF5.6-LIKE 31 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3211 Amo-Chr20 138423695 138425590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3211 1 375 C2C2-Dof Transcription Factor Family AT5G62940 40.144 7.05e-55 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Amo20g3211 zf-Dof 1.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3211 - - ahf:112784757 660.603