Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1828 ATGCAAGGTCAAAGAAGGACAACTGGATCATTCCCTGCTATTGTTGGTATGATGCAAGGGCCTAACTCGAGCGGCACTGATATGAATCATCAGTCTTCTTTGAATCATGTGCAAAGTACCGTAGATTTCCGGTTGTCAGATTATAGAGGGTCCACTGGCGAGACTGCTTGTTTACGAGCTACTGGTCCTAACATACAGAGTTTTAGTGGCTGGAATACTGGTGAACCGAGTTCTAGACTGAATCTGATCAACCAAGTCAATGATGAAGGTCTAAAATCTGAACATGGTCCATCTTCATCATGTAGTGCTACTGCCGAGGATGGTCTCAGAACAGAGGAAAGGTCATTTGAATCAAATAATATGATTTTTCCAGTTAGTTCAAATACTAATCTACATGGAAATCATTCTAGAATTCAGCCTTCTTTTTTGCGAGGATCCAGCTCCAGTCATATAACCCAGAATGGTAATCTAGATATGGAGCACACAGCACAAGCTGCTAACCGTGGGAAAGGCATAGCAGCAAGTAGCAGTGTGAATCACAATGATAGTGGTGGATATGATAGAGAGCAAACAGCATTCAGCAGTGCTTCATACAATCGTCATACTGGAACTTCATCCAAAAACCCTGGATTCATGACTTGGGGAAATAGTGGCAGTTCAAGTTCCGCTTTAGTTAATTGGGGTTCTTCCTGCAAGAGAAAGGCCCTTGAAGGTAGTTCTGGTCAACTGTGTACTGGAGGAAGCTCAAACTCTCTTTTACAATCCGAAAATGGATGTTGGCCCACTAATCCTGTTGATCTTAATGTTTCAAGCAGTTTAAATGTTTCAATGCCCTTAGAGGATGTTCCTGTCACTCTTCCTCCATTACAGCTGAACTTGAGAAGTGAAGTGAGACAAGGAGCAACTGATGCATTTCCCTTAATAAATGTCCCAGAAAATGTGGAAAGGCCTCTCAGAAACTTTGATAGGAGAATGGCCCATGTACAGCATCAGGAATCTATACCTCTCAATTTACCATCAACAGTGAGTTCTAGGCATCATAATCATTCTTCTCCCCATCAAATACCTGGCTCCCACTCATTTAATGATTCTTTGGAATTGAGGTTAACGCCTGGAGTAAATGCTGCCAATTCTGGTGCTCCTCAGAACCAGTCACCTCCCCTTAACATGCCTCCTTTTCCTTGGAATAGAGCTTCTAACCCTAGAGGGGCTAGAACTTCAACTTCTCATAACTCTGTAGAAAGAGTGGTACAGGAAGATTTTAATATAAGAATTTTTCCAAGAGAGAGTTCTGGGCACCCGACAAATGTACCTGCACCCACAGTACATGAACCAACACCTTGGCGTACATCCTCTGCTAATGCAAACAATTCTGGAGGTGTACCTACTACATCTTGGATGGGATCTAGTTCAAACATCGTTCCATTACCTAATCCCAGCTGGATTGTTAACCCTGAAGTCCCTACAGATAATCTGCAAAGATTGTCAGAGTTCAGTCCTTGGTCTCTTTTTCCATCAATTAGCTCAGCATCCAGTGTTCAGAATGGTCATTCTGCTCCATCTTCTTCAGGATCCTCTTCTATTACTCAGGGGTCCCGCAACAATCAGCCATATCTAAGAGCAGCATTGTTAATGGAAAGGAGGGGTGGTGATGTACTCTCTACTCCGCGAGCATTAACCGTTGACAATGAGGGAAGACGCCGACTAATATCTGAGATTCGCCAAGTCTTGATTGCAATGCGGAGGGGTGATAACTTAAGGGCCGAGGATTATATGCTTTTTGACCCTTTCATATATCATGGGATGGCTGAACTGCATGACAGGCACAGAGAAATGCGCCTTGATGTTGATAACATGTCTTATGAGGAATTGTTGGCATTGGAGGAGCGAATTGGAGATGTCAGCACTGGATTGAGCGAGGATGTCATTATGAAGTCAATGAAACAGCAAATATACATGTCTGTTATGGCGGAGTCTTCTACAGATCTTGAGCCTTGTTGTATCTGTCAGGAGGATTATACTGAGGGAGAGAATGTTGGCTCGCTAGATTGTGGACATGAATTTCACAGTAATTGCATCAAGCAATGGCTAATGCAGAAGAACCTTTGCCCCATTTGCAAAACAACAGGCTTAGCTACATGA 2142 0.4314 MQGQRRTTGSFPAIVGMMQGPNSSGTDMNHQSSLNHVQSTVDFRLSDYRGSTGETACLRATGPNIQSFSGWNTGEPSSRLNLINQVNDEGLKSEHGPSSSCSATAEDGLRTEERSFESNNMIFPVSSNTNLHGNHSRIQPSFLRGSSSSHITQNGNLDMEHTAQAANRGKGIAASSSVNHNDSGGYDREQTAFSSASYNRHTGTSSKNPGFMTWGNSGSSSSALVNWGSSCKRKALEGSSGQLCTGGSSNSLLQSENGCWPTNPVDLNVSSSLNVSMPLEDVPVTLPPLQLNLRSEVRQGATDAFPLINVPENVERPLRNFDRRMAHVQHQESIPLNLPSTVSSRHHNHSSPHQIPGSHSFNDSLELRLTPGVNAANSGAPQNQSPPLNMPPFPWNRASNPRGARTSTSHNSVERVVQEDFNIRIFPRESSGHPTNVPAPTVHEPTPWRTSSANANNSGGVPTTSWMGSSSNIVPLPNPSWIVNPEVPTDNLQRLSEFSPWSLFPSISSASSVQNGHSAPSSSGSSSITQGSRNNQPYLRAALLMERRGGDVLSTPRALTVDNEGRRRLISEIRQVLIAMRRGDNLRAEDYMLFDPFIYHGMAELHDRHREMRLDVDNMSYEELLALEERIGDVSTGLSEDVIMKSMKQQIYMSVMAESSTDLEPCCICQEDYTEGENVGSLDCGHEFHSNCIKQWLMQKNLCPICKTTGLAT* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1828 713 MobiDBLite consensus disorder prediction 445 470 - -
Amo20g1828 713 SMART ring_2 666 706 IPR001841 -
Amo20g1828 713 MobiDBLite consensus disorder prediction 89 106 - -
Amo20g1828 713 MobiDBLite consensus disorder prediction 340 367 - -
Amo20g1828 713 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 3 713 IPR045191 GO:0061630
Amo20g1828 713 MobiDBLite consensus disorder prediction 17 34 - -
Amo20g1828 713 SUPERFAMILY RING/U-box 644 709 - -
Amo20g1828 713 MobiDBLite consensus disorder prediction 166 189 - -
Amo20g1828 713 MobiDBLite consensus disorder prediction 169 189 - -
Amo20g1828 713 MobiDBLite consensus disorder prediction 512 533 - -
Amo20g1828 713 MobiDBLite consensus disorder prediction 89 112 - -
Amo20g1828 713 CDD RING-H2_TTC3 665 707 - -
Amo20g1828 713 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 630 710 IPR013083 -
Amo20g1828 713 MobiDBLite consensus disorder prediction 340 411 - -
Amo20g1828 713 ProSiteProfiles Zinc finger RING-type profile. 666 707 IPR001841 -
Amo20g1828 713 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 3 713 - -
Amo20g1828 713 MobiDBLite consensus disorder prediction 127 154 - -
Amo20g1828 713 Pfam Ring finger domain 666 707 IPR001841 -
Amo20g1828 713 MobiDBLite consensus disorder prediction 1 34 - -
Amo20g1828 713 MobiDBLite consensus disorder prediction 427 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1828 Amo-Chr20 61538081 61543717 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1828 18 713 C3H Transcription Factor Family AT2G15530 36.631 6.46e-108 342
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1828 20 61538081 61543717 Amo20g1828 20 61538081 61543717 ECH
Amo16g3829 16 150055551 150062313 Amo20g1828 20 61538081 61543717 ECH