Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1710 TCAGCCAAGCCTCACAACACTTCCCTAGCCCCACCGCCGGCCGAGCAAGAGCACCTGCCGTGCCCTCCCTGCGACTCTACTAATACCAAGTTCTACTACTACAACAACTACAACTTCTCCCAGCCTCGCCACTTCTGCAAGTCCTGCCGCCGCTATTGGACCGACGGCGGCACTCTCCGTGACATCCCCGTCGGCGGTGAAAGCCCACCCGTGCAGTTCGGTGGATTAGTTGTGGATGGTGAAGCAAAGGGTAATAACGTGAGCTTGTGCGGTGGGAGCTTCACTTTGTTGCTGAGCAACACACAGCAGGGTCCTGGTGGGTTTCTGGCTCTGGGTGGGTTCGGGCTTGGTCTTGGGCCTGGGCTCGAAGATGTTGGATTTGGGATGGGGAGAGGCGGTTGGGCTTTCCCGGACATGGTGGCGGACGGAGGCAGCATTGGCGGCGGTGTTGCGGGCTCCGGTGTTGGGCACACGTGGGGTGAGGGGGAGTGGGGTGATGGGGTGAGGGATGGGGGGTGA 519 0.6108 SAKPHNTSLAPPPAEQEHLPCPPCDSTNTKFYYYNNYNFSQPRHFCKSCRRYWTDGGTLRDIPVGGESPPVQFGGLVVDGEAKGNNVSLCGGSFTLLLSNTQQGPGGFLALGGFGLGLGPGLEDVGFGMGRGGWAFPDMVADGGSIGGGVAGSGVGHTWGEGEWGDGVRDGG* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1710 172 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 80 162 IPR045174 GO:0003700|GO:0006355
Amo20g1710 172 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 3 69 IPR045174 GO:0003700|GO:0006355
Amo20g1710 172 Pfam Dof domain, zinc finger 17 67 IPR003851 GO:0003677|GO:0006355
Amo20g1710 172 PANTHER DOF ZINC FINGER PROTEIN DOF3.4 80 162 - -
Amo20g1710 172 PANTHER DOF ZINC FINGER PROTEIN DOF3.4 3 69 - -
Amo20g1710 172 ProSiteProfiles Zinc finger Dof-type profile. 19 73 IPR003851 GO:0003677|GO:0006355
Amo20g1710 172 MobiDBLite consensus disorder prediction 1 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1710 Amo-Chr20 49135690 49136349 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1710 8 151 C2C2-Dof Transcription Factor Family AT5G66940 42.541 7.45e-35 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Amo20g1710 zf-Dof 9.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1710 - - aip:107620759 283.493