Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1178 ATGGTGGTGATCCAAGAAGAAATGGATCCGCCCTATGTTCAATTGTCCGATACAGAAGACGAGGAAATTGATGCTACTGCGACAGCAGAAGATGAAACTATAAATTATGAAAATCTGAAGAAGCGCATATGGAAAGACCGTATCCTTCTCCAGAAAATGAAGGAGAAACTTAACATGGACGAATTTGAAAACAAAGAAGCCAAACAAGAAGCGTCCAGGAAGAAAAAGATGTCTAGGGCACAAGACTCTGTCCTCAAATACATGGTCAAAATAATGGAGGTTTGCAAAGCTCGTGGATTTGTCTATGGCATCGTCCCCGAAAAAGGTAAACCAGTTACTGGCAGCTCGGATAGTTTGCGAGAATGGTGGAAAGAAAATATTAGATTTGACCAAACTGCTCCTACAGCAATTGCAAAGTATTTACCGTTACTTGAAAAGGGAGAGTTAGATGAATCGTCAAGCATACACCTTCTCCAAGATCTTCAAGACACAACACTAGGATCTCTTCTTTCAGCACTAATGCAACACTGTGTGCCGCCACAAAGGAGGTACCCTTTGGATAAAGGCGTGGCCCCGCCGTGGTGGCCTAATGGGTCAGAGGCATGGTGGGGTGAACAGGGCCTTTTGGCTCAAGAAAACGGGCCACCACCGTACAAGAAACCCCATGATTTGAAGAAGGCATGGAAGGTTTCGGTTTTGGCTTCAGTTATAAAACATATGTCCCCTGACTTGGAGAAATTGAGAAGGCTTGTGACTCAATCAAAGACCTTGCAAGATAGGATGACTGCCAAAGACAGCGCTACTTGGTCCAAAGTTGTGAACAAGGAAGAAGCTTCGTTGAGACTTACCAACAAGTGTCTTAAGATTTCTCATTCTTCGCCTAGCGACGAGGAGAATAATAAAGAAGACGGTGAAGGAGAAATCGAAGTCTTTGAGTCATCCCCAATAAGCTCTATTAATAATTCTCTTGATCATGTTCTGTTTGGTGGTGACGGCGGGAGTAGCAACAATGGAGACAGTGAAAAAAGAAAGTGTAATTTTGATAGTAATAATAATGGTAACAACTTTGTGGACAAACTACTGTATGCATGTCAGAACGTAGATTGTCCACAAAGCGATTTGTCTTTGGGATTTAAAGACAAGAATTCAAGAATGGACCACGAGTCGATGTGCGCTTTTCGCGGTGCTACTCTCAATCATCAGGAAAGTAACAGCAGCAATGAAAATTCGAAGGCTTTCCATGATTATCTGTCGAGTGAGGAGAGGATGACAAGTGTTGGAGATTGGATGAATATGGAGGTAGCCAAGGCCAATGACAACAATAACAATAATAATAATTTTGGTGACACTGATTTTGGCGATATTGATATTATGAACAGGATGGAAGAGATTGCAGGTGAAGCTTTTGGTGAGGACAATTTAGGGTTGTGGCCGAATGACATTGAAGGTTGTGAGTTGCTTGCGGCATTGGAGATGGTTAGAGCAGATAGCGTGATAGATTCCACTCATCAGAATAATAAATAA 1524 0.4226 MVVIQEEMDPPYVQLSDTEDEEIDATATAEDETINYENLKKRIWKDRILLQKMKEKLNMDEFENKEAKQEASRKKKMSRAQDSVLKYMVKIMEVCKARGFVYGIVPEKGKPVTGSSDSLREWWKENIRFDQTAPTAIAKYLPLLEKGELDESSSIHLLQDLQDTTLGSLLSALMQHCVPPQRRYPLDKGVAPPWWPNGSEAWWGEQGLLAQENGPPPYKKPHDLKKAWKVSVLASVIKHMSPDLEKLRRLVTQSKTLQDRMTAKDSATWSKVVNKEEASLRLTNKCLKISHSSPSDEENNKEDGEGEIEVFESSPISSINNSLDHVLFGGDGGSSNNGDSEKRKCNFDSNNNGNNFVDKLLYACQNVDCPQSDLSLGFKDKNSRMDHESMCAFRGATLNHQESNSSNENSKAFHDYLSSEERMTSVGDWMNMEVAKANDNNNNNNNFGDTDFGDIDIMNRMEEIAGEAFGEDNLGLWPNDIEGCELLAALEMVRADSVIDSTHQNNK* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1178 507 Pfam Ethylene insensitive 3 37 277 IPR006957 GO:0005634
Amo20g1178 507 PANTHER ETHYLENE INSENSITIVE PROTEIN 19 498 - -
Amo20g1178 507 Coils Coil 50 70 - -
Amo20g1178 507 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 19 498 IPR006957 GO:0005634
Amo20g1178 507 SUPERFAMILY DNA-binding domain of EIN3-like 155 279 IPR023278 GO:0003700|GO:0005634
Amo20g1178 507 Gene3D - 147 286 IPR023278 GO:0003700|GO:0005634
Amo20g1178 507 Gene3D - 66 146 IPR023278 GO:0003700|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1178 Amo-Chr20 23092601 23094468 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1178 32 485 EIL Transcription Factor Family AT5G65100 45.283 4.82e-131 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF EIL Amo20g1178 EIN3 1.1e-114 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1178 20 23092601 23094468 Amo10g0741 10 10917767 10919579 hybridization