Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0377 ATGGCACTAAGGCAATGGTTACCAGGTTTGTTTAAGGAGGAAGGGGGAGTAAAGTGCCCTCGATGTGATTCATCAAACACCAAGTTTTGTTACTACAACAACTACAGCTTGTCACAGCCAAGGCACTTCTGCAAAGCCTGCAAGAGATACTGGACAAGAGGTGGAACCCTCAGAAACGTTCCTGTTGGCGGCGGTTCCAGGAAGAACAAGCGTCGTCTCAACCACCCACACCCAAACACTACTTCTTCTCAGATCAACAACAACAACGATGATGTGAATCTCCCCTCCTTATTCCACACCTTCACTTCTGATGCTGCTCTTCAAAATAATCATGTCTTTGCTGCTTCTTCTTCAAGCTATGATTCTATCTTGTTACCTCCAACTATGATGCCGATGCAACAAAACCTCATCAATGGTGGTTATTATTGCCAAAACCAGATCGAGCAGCAGCATCATGTGCCTAATTTCTCTGATCCAAATTCTCTTTATTATTGGAGTAATGCTTTCACTTCTTGGAACAACGATAATAATCATCATCTTACTTCTCTCATCTAA 555 0.4288 MALRQWLPGLFKEEGGVKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGSRKNKRRLNHPHPNTTSSQINNNNDDVNLPSLFHTFTSDAALQNNHVFAASSSSYDSILLPPTMMPMQQNLINGGYYCQNQIEQQHHVPNFSDPNSLYYWSNAFTSWNNDNNHHLTSLI* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0377 184 Pfam Dof domain, zinc finger 17 71 IPR003851 GO:0003677|GO:0006355
Amo20g0377 184 ProSitePatterns Zinc finger Dof-type signature. 19 55 IPR003851 GO:0003677|GO:0006355
Amo20g0377 184 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 13 148 IPR045174 GO:0003700|GO:0006355
Amo20g0377 184 PANTHER DOF ZINC FINGER PROTEIN DOF2.4-LIKE 13 148 - -
Amo20g0377 184 ProSiteProfiles Zinc finger Dof-type profile. 17 71 IPR003851 GO:0003677|GO:0006355
Amo20g0377 184 MobiDBLite consensus disorder prediction 58 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0377 Amo-Chr20 4779731 4780416 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0377 17 71 C2C2-Dof Transcription Factor Family AT1G28310 94.545 3.18e-33 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Amo20g0377 zf-Dof 1.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0377 - - adu:107468324 351.288