Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4146 ATGAGCAGCAGCAAGAAGATGAACCCTCCAGACGGAGAAGAAGAAGAAGAAGAACCACTATCGAAAGCTGCAAGAGCTGCTGAAGATCTTTACCACCTCCGAGACACTTATTTTCCACTTGACCCTAACGACAGAACCTCCAAGCTCCACCACCATTCCGATCTCGCCCTCTCCCTCCTCGATTCCATTCCCCCAGAACAAAGAAAATCGTCTCTGCAGCGTGCAACATTTGAGTATCTTAGAGGCAAGATATTGGATGTGTTCCCTGACTATAGGAAAGAAGCTGAGGATCATCTCTCTAAAGCTGTTAAGTTAAACCCGTCTCTTGCAGATGCTTGGCTATGTTTAGGTAACTGCATTTGGAAGAAAGGGGATTTATCTGCTGCAAAGAACTGCCTTAGTCTTGCATTAAACAAGGGTCCTGACAAAAATATTCTTTGTCAATTATCAATGCTTAAAAGAAAAATGTCTCAAGGTGCGGAGAATCAAGCTGAACTTGTTGAGGAAAGCATTCAACATGCCAAGCAAGCAATCACTTTGGATGTCAAGGATGGGAACTCTTGGTATAATCTTGGAAATGCATGCCTTACAAGCTTTTTTGTCACTGGAGCTTGGGATCATAGCAAACTTTTACATTCCTTAAAAGCATATCAAAATGCCGAGAAAGATGAAAGAATGAAGTCCAATCCAGATTTATATTTTAACAGTGCTACCGTTAACAGATATCTAGAGAACTACGATAGGGCTCTTAGCGGATTTGAGGCTGCTGCTCTAAAGGATCCAGGACTCAATGCTTCAGAGGAAGTTCAGAAGATTGTCAATTTACTTGACAAGGTGGACAATCTTTTGAGGGGAAATTTACGAGCTAAGAGAGTGGCTTCTTTGGCATCATCATTGGCTGCTGTTAATTTGAACTCATCACAGAAGAGAGTTACCATAGACCTCATGTCAGAGGGTCTAAATAGAAACGTAGCAGTAGATGGGAAGGTGCTTTTCTTTCTTAGGAGTGAGTGTGTTGCTCCCCTATACTATTTGCTTTGTGATTCGAATCAAATTTGCTTTGTTCTCACAGTTTATGGTTTACGGAACGATGTGATTAAAGAAGGAGATCAGCTGACACTGCTTGACCCTTTCTTCCGTGATGTGGACGTGTCCTGGAAGGAAAAGCATTACCAGTTCAAATCTATACGCCTGGATTTCTATGAACAAATGCTTGTAAATGGAAAAGCTCTGACTCCTCAACATGCTGTCCGTACATCAATATATGCGCAACATAAACCCTGA 1284 0.419 MSSSKKMNPPDGEEEEEEPLSKAARAAEDLYHLRDTYFPLDPNDRTSKLHHHSDLALSLLDSIPPEQRKSSLQRATFEYLRGKILDVFPDYRKEAEDHLSKAVKLNPSLADAWLCLGNCIWKKGDLSAAKNCLSLALNKGPDKNILCQLSMLKRKMSQGAENQAELVEESIQHAKQAITLDVKDGNSWYNLGNACLTSFFVTGAWDHSKLLHSLKAYQNAEKDERMKSNPDLYFNSATVNRYLENYDRALSGFEAAALKDPGLNASEEVQKIVNLLDKVDNLLRGNLRAKRVASLASSLAAVNLNSSQKRVTIDLMSEGLNRNVAVDGKVLFFLRSECVAPLYYLLCDSNQICFVLTVYGLRNDVIKEGDQLTLLDPFFRDVDVSWKEKHYQFKSIRLDFYEQMLVNGKALTPQHAVRTSIYAQHKP* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4146 427 Gene3D Tetratricopeptide repeat domain 11 286 IPR011990 GO:0005515
Amo19g4146 427 SUPERFAMILY TPR-like 80 254 IPR011990 GO:0005515
Amo19g4146 427 MobiDBLite consensus disorder prediction 1 25 - -
Amo19g4146 427 SMART tpr_5 110 143 IPR019734 GO:0005515
Amo19g4146 427 SMART tpr_5 230 263 IPR019734 GO:0005515
Amo19g4146 427 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 18 351 - -
Amo19g4146 427 MobiDBLite consensus disorder prediction 8 25 - -
Amo19g4146 427 Pfam Tetratricopeptide repeat protein 5 OB fold domain 309 419 IPR032076 -
Amo19g4146 427 Coils Coil 157 177 - -
Amo19g4146 427 Gene3D - 287 426 IPR038645 -
Amo19g4146 427 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 18 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4146 Amo-Chr19 158006041 158010463 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4146 19 158006041 158010463 Amo19g4146 19 158006041 158010463 ECH