Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4143 ATGGCCGCGACGCCGTCGTCCTCCGCCGCGGGAGCCACCAACATCATGCTCGCAATTTTCGAGAAGAAGACTAATTCCGTCGACCTGTACCGCCCTCTACGCAACTACATCGCATTCAACTACTCCGAGCGTGAGGCCCAGAACCTCGAAGACGATCTCCAAACCCTAAAGCAGCAACGCGCTGACATCGAGCGCCACTCCGATCCCTCCCTCCCTTCCCGCCGGGACCTTCTCCAGTCCTACTTCAGAGCCCTCTGCCTCGTTGAGACCCGATTCCCAATCTCCCCCGACCCGGCGCACGTCAACGCCCTCACCTTCGTCTGGTTCGACGCCTTCAAGCCCAAGCAGAAGTCTTCCCAGCAGAACATCCATCTCGAGAAGGCCTCCGTACTCTTCAATTTGGGAGCAGTGTACAGCCAAATTGGGCTTTCGTATGATCGCAACACCGTGGACGGCCGTCGCCAGGCCTCACATGCGTTTATAGCAGCCGCGGGGGCGTTTGCTTATTTGAGGGATAATGCGTCCATGAAAGCCTCCATTGGAGGATCCGCCACCGTGGACATCTCGGGGGAGTGCGCTGGGATGCTTGAGAAGCTGATGCTAGCTCAGGCTCAAGAGTGCGTCTTTGAGAACAGTATCGCCAAAGGAAGCACGCCAGGTGTTTGTTCCAAGATCTCTAGGCAGGTTGGGCTGTATTATGAGGAAGCTTTAGCTGCATTGAATGTTGCACCTTTAAACACACATTTTGATAAATCGTGGATAGCGCATGTCCAGCTGAAATCGGCTTTGTTCTATGCTGAAGCTTGCTTTAGGTATGGACTGGAGCTACATGAAAAAGAAGAAATAGCAGAGGAGATTGCACGACTCAGGAGTGCCATTAACGTGCTAACTGAGGCGAAGAGAAATTCAAAGGGTGCTGCAGCACAGATTCTCGATGCAATTGGCAAGTTAGAGGCCAATATTAACCGAAACTTGGAAAGGGCTGTCAAGGAGAACGACAGGGTTTACCTCATGAGAGTTCCTTCTCCCAGTTCCCTACCACCTCTTGCAGCATTTTCTATGGTGAAGCCAATGGCAATGAGTGAGGTGCTGGATGCAAGCAAAGAGAAGATGTTTGCTAGCCTTGTACCTGACAGTAGTACAAAGGCCCTCTCCAGGTATACTGAAATGGTAGATGACATTATAAGAATGCAGGCTGAGAAGCTACAGCAAGCTAGTGAGCTAACACGAGTTAGGCTCAAGGAAATGGAACTTCCGGATTCTATTCTTGCTTTGGAAGGAAATTTTACTCTTCCAACAAGTCTCAAAGAAGATGTGGAGGCTGTGCAGATCAGTGGGGGACCTGCTGGCTTGGAAGCAGAGTTACAGCAACTGAGGGACCTAAGGAGGGTGAATCAAGAACTATTGGTCCAGACTGAGGAGCTGTTGCAAAAGGAAGCAAGAGAAGATTCTCAATTTAGAAGCCAGTTTGGGACAAAATGGACTAGACCTCAATCAAGCACTTTGACAAAGAACTTGCAGGATAGGCTGAACAGGTTTGCAGGTAACTTGAAGCAAGCTGCTGAAAGTGATGGTCGAATTGAGCGTTCGGTTAGAGAAAATTCGGCATTCATGTCAATCCTTGATGCCCGCCCGATTGAATCCGCACTTCCAACCTTGGCAAGGCCGATTATGTCTTTAGATCAAAATGAAGATGCTATTGTGGGATCTCTCAAGCAGAGCCTGAGGCAACTAGAAACTCTTGGAGCCCAAAGGGCTGGTCTTGAAGACATGCTTAAAGAGATGAAAAGAAAGGATGATATATTACCAAAGTTGATGACATCCACTGGCTCTCATGAGGATCTCTTTAAGAAGGAAATAGCAAAATATGACCATATTTGTGAAGAAATAGCTCAAAATATTGAGGCACAGGAGCAACTGTTGATGCAGATCCAGGCTCAGAATGATGAATTCTCGGCTCTCTTCAATCTTGAAGACTACAAAGCTTCACGTGAAAAATGCTACAAGCAGATTGAAGCTGCCATAGCCAAGTTTCGAGAGATAAAAGACAACATTAATGAAGGGTTAAAATTCTATGTTACTCTGCAGGATGCGATCACAAATGTAAAGCAGCAGAGCAATGACTTCGTAATGACAAGGAACATCCAGTGCAGAGAAATGATTGAAGATGTTCAAAGACAAGTGGCTGGTCTGAGTTTCCAAGATAAAAGCTCAGGTGCTTTTAGTAGTAGCTACCCACCAGTTGGAAGCCAAAACCAAAGACCCAGTACACAACAAACAGATCCTCGTCCCCAAACACCTTATTATCAACCACCTGAGCAGCCTCCGGTTTCTTCCTACGGACATCCCCCTCCCTCATATGGTTCAGCAGCGCATCAGCCTCCACCTCCATACCACATTCCACCAACATCTGCCGCTCCATACCAACCCCATCAGGTTCATCAGCAGGCACCAGCAGAGTATGGCCAACCTGCATATCCTGGATGGCGTGGTCCATACTATAATGCGCCGGCTCAGCAACCTGGTTCTGTTCCCAGGCCTCCATATACTGTTCCATCTCCATACCCTCCACCTCATCAAGGTGGATACTATAAGCAGCAATAG 2604 0.485 MAATPSSSAAGATNIMLAIFEKKTNSVDLYRPLRNYIAFNYSEREAQNLEDDLQTLKQQRADIERHSDPSLPSRRDLLQSYFRALCLVETRFPISPDPAHVNALTFVWFDAFKPKQKSSQQNIHLEKASVLFNLGAVYSQIGLSYDRNTVDGRRQASHAFIAAAGAFAYLRDNASMKASIGGSATVDISGECAGMLEKLMLAQAQECVFENSIAKGSTPGVCSKISRQVGLYYEEALAALNVAPLNTHFDKSWIAHVQLKSALFYAEACFRYGLELHEKEEIAEEIARLRSAINVLTEAKRNSKGAAAQILDAIGKLEANINRNLERAVKENDRVYLMRVPSPSSLPPLAAFSMVKPMAMSEVLDASKEKMFASLVPDSSTKALSRYTEMVDDIIRMQAEKLQQASELTRVRLKEMELPDSILALEGNFTLPTSLKEDVEAVQISGGPAGLEAELQQLRDLRRVNQELLVQTEELLQKEAREDSQFRSQFGTKWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDGRIERSVRENSAFMSILDARPIESALPTLARPIMSLDQNEDAIVGSLKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSTGSHEDLFKKEIAKYDHICEEIAQNIEAQEQLLMQIQAQNDEFSALFNLEDYKASREKCYKQIEAAIAKFREIKDNINEGLKFYVTLQDAITNVKQQSNDFVMTRNIQCREMIEDVQRQVAGLSFQDKSSGAFSSSYPPVGSQNQRPSTQQTDPRPQTPYYQPPEQPPVSSYGHPPPSYGSAAHQPPPPYHIPPTSAAPYQPHQVHQQAPAEYGQPAYPGWRGPYYNAPAQQPGSVPRPPYTVPSPYPPPHQGGYYKQQ* 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4143 867 Gene3D alix/aip1 like domains 12 376 IPR038499 -
Amo19g4143 867 MobiDBLite consensus disorder prediction 765 804 - -
Amo19g4143 867 ProSiteProfiles BRO1 domain profile. 14 409 IPR004328 -
Amo19g4143 867 PANTHER PROGRAMMED CELL DEATH 6-INTERACTING PROTEIN-LIKE 5 856 - -
Amo19g4143 867 Coils Coil 627 654 - -
Amo19g4143 867 CDD BRO1_Alix_like_1 16 371 - -
Amo19g4143 867 MobiDBLite consensus disorder prediction 739 764 - -
Amo19g4143 867 CDD V_Alix_like_1 377 713 - -
Amo19g4143 867 Coils Coil 279 299 - -
Amo19g4143 867 PANTHER PCD6 INTERACTING PROTEIN-RELATED 5 856 IPR045251 GO:0071985
Amo19g4143 867 Pfam ALIX V-shaped domain binding to HIV 431 715 IPR025304 GO:0005515
Amo19g4143 867 Coils Coil 39 66 - -
Amo19g4143 867 Gene3D alix/aip1 like domains 423 704 - -
Amo19g4143 867 Coils Coil 578 598 - -
Amo19g4143 867 Pfam BRO1-like domain 16 394 IPR004328 -
Amo19g4143 867 SMART BRO1_2 15 399 IPR004328 -
Amo19g4143 867 MobiDBLite consensus disorder prediction 841 859 - -
Amo19g4143 867 Gene3D alix/aip1 in complex with the ypdl late domain 377 655 - -
Amo19g4143 867 MobiDBLite consensus disorder prediction 739 867 - -
Amo19g4143 867 Coils Coil 451 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4143 Amo-Chr19 157993387 157997727 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4143 19 157993387 157997727 Amo19g4143 19 157993387 157997727 ECH