Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4124 ATGCCCTTCATTATTCTCTCTTCTTCACAACCTTCTTTGTTGACCGCCAAAGCCCTAAAACCTTCGATTCACGCCATGAAGGACCGCCCTACGCTGTCCTCTTATGGCGCCATTTACGTTCCCCCGCACCACCGCCTCCGCTCCGTCATCACTTCCGCCAATTACAACTCCTCCGCTCCCTCTGTAGCCAAGCTCCGCGATCACCGTGGTGCAGCTCTAAACCCTAGACCCGTTGCTTCAGCTGCTCCTACCACTGTGCATCGCTCGCAAACGACGTTGCCGGAGCAAATTCCTGACAAGGGGAATTCGCGCTTTGTTTCAGCTTACGACGACGTGGTTTCCGAGGAAGGCTCCGATCGTGAATTCGAGGCTCCCTCATTTCGGAGTGCTTCACCAAATGATAATGTTGATGAGTGGAAGAGGAAGCTAACCTTGCTCTTAAACGACAAGAGTAAGCAAGAGTTGTTGTCCAGGGAGAAAAAGGATAGGCGTGATTTTGATCAAATTGCGCTTTTGGCAAGCAGAATGGGGTTGTATAGCCACATGTATGCAAAGGTTGTTGTCTTCAGTAAGGTTCCACTTCCAAACTATAGATATGACTTGGATGATAGGCGGCCGCAGAGGGAGGTGAGCATGCCTATAACTTTGTTAAGGCGAGTTGATGCATACTTTGAGGAACACCTTACCCGAAAGTCCAAGATGAAGGAAAGCTTTTCAGATGTATCATTTACAAGATCAAGCAGTAACAGTAGTATTGGTACAGATGAAGGGCTTTTTGAGCACCCTGAGCCACTTGCATCTAGTAAGGCTGTTGGGGAGAAAATACTTAGGCGGAGGAGCTTGCAAATGCATGATCAGCAGCAAGCATGGCAGTGGAATGAAACAAAATGGCTTGGGGGTCCTTTACATCCTCCCTTACCATTTCAGGAATCTCCAGAAGGAAGAAGAATGCTAGAATTTCGCAGGAGTCTCCCTGCTTATAAAGAGAAAGAAGCAATATTGTCTCTCTTATCAAGAAATCAGGTAGTTGTCATCTCAGGCGAAACAGGTTGTGGCAAGACAACTCAAATTCCACAGTTTATTTTAGAATCTGAGATAGAATCAGTTCGAGGAGCTGCTTGTAATATCATATGCACACAACCAAGACGCATATCAGCTATGTCTGTTTCTGAAAGGGTTGCCTACGAGAGAGGGGAGAAATTGGGTGAATCTGTTGGATATAAAGTTCGATTGGAGGGTATGAAGGGGAGAGATACCCATCTTCTCTTTTGCACCACGGGCATCTTATTAAGAAGATTGCTAGCTGATAGAAACTTAACAGGTGTAACTCATGTTATCGTGGATGAAATTCATGAGCGTGGCATGAATGAAGATTTTCTGCTTATCGTCCTTAAAGATCTCCTTCCTCACCGACCTGAAATGAAACTGATTTTGATGAGTGCTACCCTAGATTCAGAGCTCTTCTCTTCTTACTTTAATGGGGCACCAGTTATGAATATTCCGGGCTTCACATATCCCGTTAGAACTCATTTTTTGGAGGACATTCTTGAAATGACGGGCTACAGATTGACAACTTCTAATCAAATTGATGATTATGGTCAAGAAAGGATGTGGAAAATGAACAAACAGGTCCCAAGAAAGAGGAAAAGCCAAATTGCTTATGTTGTCGAGAGGTTAATATTTGAAGAACCCAAAGATGGAGTAAGAAAAATAGTGCTTGCAACAAATATCGCTGAAACGAGTATCACAATAAATGACGTTGTTTTTGTGCTTGACTGCGGAAAAGCAAAAGAAACATCATATGATGCACTGAATAACACGCCCTGTTTGCTTCCAACATGGATCTCTAAGGTTTCTGCCCAACAGAGACGAGGAAGAGCTGGTCGTGTTCAACCTGGAGTGTGTTACCATATCTATCCTAGATGTGTATATGATGCATTTGCTGAGTATCAATTGCCAGAAATTTTGAGGACACCCTTGCAATCTCTGTGTCTGCAAATAAAAAGTCTAAGACTTGGAAGCATACCTGAGTTCTTGTCTAGGGCTTTGCAGTCTCCGGAGATCCTTGCGGTACAAAATGCTATTGAGTATTTGAAAATAATTGGGGCTTTGGATGAGAATGAGAATTTGACTACTCTAGGGGCTATCTTCAATTGCCTGGATCCAATATTAACTGTGGCTGCTGGTCTTAGTGTGAGAGATCCTTTCCTAACACCACTGGACAAAAAAGACCTTGCAGAGGCAGCAAAATCTCAGTTTGCTGGAGCATATAGTGACCACCTTGCACTTATAAAGGCTTACGAGGGTTGGAAAGATGCAGAATTAGACATGGGAGGATGTGAATATTGCTGGAAAAATTTTCTTTCAGCACAATCAATGAAAGCTATTGATGCTCTTAGGAGAGAGTTCAGATGCCTGCTCAAGGATATTGGATTAGTTGATAGCAATACAGCCAACTGCAACTTGTGGAGCTGTGATGTGAATCTTATCCGGGCAGTTATTTGCTATGGTCTATATCCTGGAATTTGCGCTGTTGTGCACAATGAAAAGTCATTCTCTTTGAAAACAATGGAGGATGGTCAAGTGCTCCTATATTCGAACTCCGTCAATGCTCGGGAAACTAGAATTCCATATCCATGGTTACTTTTTAATGAGAAGATAAAAGTGAACTCTGTTTTCCTCCGCGACTCAACAGCTGTGCCTGATGCAGTGGTGCTTCTGTTTGGTGGAAACTTATTGAAAGGGGATGCTGATGGCCACTTAAAAATGTTGGGAGGATATCTGGAGTTCTTCATGGAACCTCCTGTTGCTGATCTGTACCAGTGTGTAAAGAGAGAACTTGATGACTTAATTCAAAGAAAACTACTTTTTCCAAAGATGAGCATACACTTGTATGATGAACTCCTATCAGCAGTGCGGTTGCTGATTTCCATAGACACATGTGAAGGCAAATTTGTATTTGGTCGTCGGGTCTTTAAACCAGCAAAGTCAACAGTGATGGCCACATCACATCCAGCATCGATTTCAAGGACTGAGAGTGGCCCTGGGGGTGATAATTCTAAAAGTCAGCTCCAGACCTTACTCACAAGAGCAGGATATGCTGCACCCAGCTACAAGACTAAACAATTGAAGAATAATCAGTTTCGGGCTACAGTTGAGTTCAATGGAATGCAGATAATGGGCCAACCCTGTAGCAATAAGAAAAGTGCAGAAAAAGATGCTGCAGCTGAGGCCTTGCAGTGGCTGATGGGTGGAAAACAGTCAGGCAGTGAGTATATCAGTCACATGTCCAAGTTGCTAAAGAAAAGTAAGAAGGATCACAGCTGA 3327 0.4355 MPFIILSSSQPSLLTAKALKPSIHAMKDRPTLSSYGAIYVPPHHRLRSVITSANYNSSAPSVAKLRDHRGAALNPRPVASAAPTTVHRSQTTLPEQIPDKGNSRFVSAYDDVVSEEGSDREFEAPSFRSASPNDNVDEWKRKLTLLLNDKSKQELLSREKKDRRDFDQIALLASRMGLYSHMYAKVVVFSKVPLPNYRYDLDDRRPQREVSMPITLLRRVDAYFEEHLTRKSKMKESFSDVSFTRSSSNSSIGTDEGLFEHPEPLASSKAVGEKILRRRSLQMHDQQQAWQWNETKWLGGPLHPPLPFQESPEGRRMLEFRRSLPAYKEKEAILSLLSRNQVVVISGETGCGKTTQIPQFILESEIESVRGAACNIICTQPRRISAMSVSERVAYERGEKLGESVGYKVRLEGMKGRDTHLLFCTTGILLRRLLADRNLTGVTHVIVDEIHERGMNEDFLLIVLKDLLPHRPEMKLILMSATLDSELFSSYFNGAPVMNIPGFTYPVRTHFLEDILEMTGYRLTTSNQIDDYGQERMWKMNKQVPRKRKSQIAYVVERLIFEEPKDGVRKIVLATNIAETSITINDVVFVLDCGKAKETSYDALNNTPCLLPTWISKVSAQQRRGRAGRVQPGVCYHIYPRCVYDAFAEYQLPEILRTPLQSLCLQIKSLRLGSIPEFLSRALQSPEILAVQNAIEYLKIIGALDENENLTTLGAIFNCLDPILTVAAGLSVRDPFLTPLDKKDLAEAAKSQFAGAYSDHLALIKAYEGWKDAELDMGGCEYCWKNFLSAQSMKAIDALRREFRCLLKDIGLVDSNTANCNLWSCDVNLIRAVICYGLYPGICAVVHNEKSFSLKTMEDGQVLLYSNSVNARETRIPYPWLLFNEKIKVNSVFLRDSTAVPDAVVLLFGGNLLKGDADGHLKMLGGYLEFFMEPPVADLYQCVKRELDDLIQRKLLFPKMSIHLYDELLSAVRLLISIDTCEGKFVFGRRVFKPAKSTVMATSHPASISRTESGPGGDNSKSQLQTLLTRAGYAAPSYKTKQLKNNQFRATVEFNGMQIMGQPCSNKKSAEKDAAAEALQWLMGGKQSGSEYISHMSKLLKKSKKDHS* 1109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4124 1108 CDD SF2_C_RHA 505 639 - -
Amo19g4124 1108 Gene3D - 526 650 IPR027417 -
Amo19g4124 1108 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 331 780 IPR027417 -
Amo19g4124 1108 Pfam Double-stranded RNA binding motif 1020 1082 IPR014720 -
Amo19g4124 1108 Gene3D - 276 502 IPR027417 -
Amo19g4124 1108 Gene3D - 995 1087 - -
Amo19g4124 1108 MobiDBLite consensus disorder prediction 1003 1022 - -
Amo19g4124 1108 MobiDBLite consensus disorder prediction 239 255 - -
Amo19g4124 1108 SMART ultradead3 301 515 IPR014001 -
Amo19g4124 1108 PANTHER ATP-DEPENDENT RNA HELICASE 555 1030 - -
Amo19g4124 1108 SMART ha2_5 693 764 IPR007502 GO:0004386
Amo19g4124 1108 PANTHER ATP-DEPENDENT RNA HELICASE 94 532 - -
Amo19g4124 1108 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 94 532 - -
Amo19g4124 1108 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 555 1030 - -
Amo19g4124 1108 MobiDBLite consensus disorder prediction 75 102 - -
Amo19g4124 1108 Gene3D - 673 758 - -
Amo19g4124 1108 MobiDBLite consensus disorder prediction 239 261 - -
Amo19g4124 1108 SMART helicmild6 542 631 IPR001650 -
Amo19g4124 1108 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1019 1084 IPR014720 -
Amo19g4124 1108 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 499 671 IPR001650 -
Amo19g4124 1108 Pfam Helicase conserved C-terminal domain 558 630 IPR001650 -
Amo19g4124 1108 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 334 501 IPR014001 -
Amo19g4124 1108 Pfam DEAD/DEAH box helicase 331 485 IPR011545 GO:0003676|GO:0005524
Amo19g4124 1108 SMART DRBM_3 1020 1083 IPR014720 -
Amo19g4124 1108 MobiDBLite consensus disorder prediction 83 98 - -
Amo19g4124 1108 SUPERFAMILY dsRNA-binding domain-like 1015 1092 - -
Amo19g4124 1108 CDD DEXHc_RHA-like 340 500 - -
Amo19g4124 1108 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 830 911 IPR011709 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4124 Amo-Chr19 157778655 157787119 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4124 19 157778655 157787119 Amo19g4124 19 157778655 157787119 ECH