Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4105 ATGGAGGCGCAACCTCCAACGCCACCACACACCGCACAGCCTCCGCCGTTGTCTTCGGTGGCGCCGCCGCCACAACAACCTCAGCAACCAGTGCCGCCACCGTCGTCACACCTGAACTACCCTGACTCGGTGGACTCGTCCCCACGCTCTCGCAACACGGACTCATGGGACGAGCCCTTCCCGCCGGCGTCATCGAAGCTCCGGCTTATGTGCAGCTATGGCGGCCACATCGTTCCCCGGCCTCACGACAAGTCGCTCTGCTATGTAGGCGGCGACACTCGAATCGTGGTGGTTGAGCGAACAACTTCACTCGCGGACCTCTCCACGCGCCTCTCAAAGACGTTCCTGAATGGAAGACCGTTCAGCCTCAAGTACCAGCTCCCCAACGAAGACCTGGATTCTTTGATTTCTGTTACCACCGACGAGGACCTCGACAACATGATCGACGAGTATGACCGAACCAACAACAACCCTTCCGTGAAACCCTCGCGAATTCGGCTCTTCCTCTTCCCAACAAAGCCTGAATCGGTTCAAAGTATTCCGCCCATTCTAGAAAGTTCCGCCAAGTCTGATGATTGGTTCCTCAACGCCCTAAACGGCTCTGGATTGCTCAACCGGGGTTTCTCTGACTCTGCCTCTGTGAATTGCCTTTTGGGTCTCGACGACGATGCTTCGGGGAATAATGTTGACCATAGCTCAAGGGACCCTGTCGAGGCTTCTTCTCAGCCTGGATCTTTTGGAAACGGCAAGAATACGAAACAGGAGGTTCATTCTGTTCCCGATTCGCCCATGCTGGAGACTACTTCTTCGTTTGGCTCTACTTCTTCATCGCCGTCGCTGGCCAATTTGCCGCCGATTAGGGTTCATGTGGAAGATGGCAGCGGTGGCGGCGGGGTTAGGATGGTGCAGGATCACAAGGTTTTGGGAATTGAGGAGCAGTTTGCGCAGATGGGTGTGAGTGTTGCCGGTGGATTGGGGCAGAAGCAAGACGAGGGGCTGGTGGTGCTTTCTTCGCCTCCGCCTCCGCCTGTGCCGGTCACTCTATCTGCCGCTGGGGTGGGTGTGCCTGTTAGCTCAGCGCTGGTGGCTGGGGAGTACCAGAACAGGGTTTTCTCCGATGATGAGAGATCGGATCATGGCGTGCCTGTGGGTTACAGAAAACCACCGACACCTCAGCCACAGTTGCAGCAACAACCACAGCAACAACCACAGCTTCAGCCTCAGCCTCAGTCTCAGCCGCAGCAAACACAGTCACAGTCACAACCTCAACATCAACAGGTTTTACAGCCTCAATTTCAACCGAAGTCAACTGGCGTCGTTGATTTGCCTTCTCCAGATTCAGTTTCAAGTGATAGTAGTCTTTCAAATGCAATCTCTCGGCAAAAAGCTGTGATCTATCAAGACCAAGTTCAGATTCAGCCTGGGACTACAAGGGTTCCTAGTAACCCGGTTGATCCAAAACTAAACGTGTCCGATCCTCATGGTCGGATCCAGATGCAGCAGCTTGTACAGGACCCAGGATACTTGTTGCAACAGCAATTTGAACAACAGCCGCCGCAGCAGCAGCCTCAACAGCAACAACAGCAGCAGTTCATTCATGGTACTCATTTCATTCACCATGCTCCTCCTGGGGCCGTGCCGATATCCGCCTACTATCCAGTATATCCTTCCCAGCAACAGTCCCACCACCAGGTTTACTACGTTCCTGCGAGACAGCCCCCGGCTTACAACATGCCTGTTCAGCAGCCTAACATGGCTGAATCCGCCTCAAGCATTCCTTCCAGCCGTCCCCAGACTCCGCCAAATCCCACCACATTGGTTCCACCTTCTGCAGCTTACAACCCCATGAGAAATGCTCCCATGCCCAAGACTGAAATGACGGCAGCTGCATACAGAGCTGTGAGTGCCGGTACCCCTCAATTGGTTCAAGTTCCTACCAGTCAGCATCAGCAACAGTATGTTGCTTACTCCCAGATTCACCACCCTTCTCAGTCTATTGCTCAAAATTCTGCTCCCCCTCATAATTATGCTTTTGATTATGCGGATCCGGCACATGCTCAGATATACTACTCTCAACCTCTGGCACCCTCAATGCCTTCTCAGTACCAGACCATGACAGCCGCTGCCATGGTAATGCCGGACGGTTCCACTCAGCAACCCTCGGACAACATGAAGCAACAGATAAGAACTTCACAGCCATTATAA 2205 0.537 MEAQPPTPPHTAQPPPLSSVAPPPQQPQQPVPPPSSHLNYPDSVDSSPRSRNTDSWDEPFPPASSKLRLMCSYGGHIVPRPHDKSLCYVGGDTRIVVVERTTSLADLSTRLSKTFLNGRPFSLKYQLPNEDLDSLISVTTDEDLDNMIDEYDRTNNNPSVKPSRIRLFLFPTKPESVQSIPPILESSAKSDDWFLNALNGSGLLNRGFSDSASVNCLLGLDDDASGNNVDHSSRDPVEASSQPGSFGNGKNTKQEVHSVPDSPMLETTSSFGSTSSSPSLANLPPIRVHVEDGSGGGGVRMVQDHKVLGIEEQFAQMGVSVAGGLGQKQDEGLVVLSSPPPPPVPVTLSAAGVGVPVSSALVAGEYQNRVFSDDERSDHGVPVGYRKPPTPQPQLQQQPQQQPQLQPQPQSQPQQTQSQSQPQHQQVLQPQFQPKSTGVVDLPSPDSVSSDSSLSNAISRQKAVIYQDQVQIQPGTTRVPSNPVDPKLNVSDPHGRIQMQQLVQDPGYLLQQQFEQQPPQQQPQQQQQQQFIHGTHFIHHAPPGAVPISAYYPVYPSQQQSHHQVYYVPARQPPAYNMPVQQPNMAESASSIPSSRPQTPPNPTTLVPPSAAYNPMRNAPMPKTEMTAAAYRAVSAGTPQLVQVPTSQHQQQYVAYSQIHHPSQSIAQNSAPPHNYAFDYADPAHAQIYYSQPLAPSMPSQYQTMTAAAMVMPDGSTQQPSDNMKQQIRTSQPL* 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4105 734 Pfam PB1 domain 82 171 IPR000270 GO:0005515
Amo19g4105 734 MobiDBLite consensus disorder prediction 39 59 - -
Amo19g4105 734 MobiDBLite consensus disorder prediction 1 37 - -
Amo19g4105 734 MobiDBLite consensus disorder prediction 397 455 - -
Amo19g4105 734 SMART PB1_new 81 172 IPR000270 GO:0005515
Amo19g4105 734 MobiDBLite consensus disorder prediction 472 492 - -
Amo19g4105 734 MobiDBLite consensus disorder prediction 1 60 - -
Amo19g4105 734 MobiDBLite consensus disorder prediction 577 613 - -
Amo19g4105 734 MobiDBLite consensus disorder prediction 710 734 - -
Amo19g4105 734 SUPERFAMILY CAD & PB1 domains 82 180 - -
Amo19g4105 734 MobiDBLite consensus disorder prediction 230 282 - -
Amo19g4105 734 MobiDBLite consensus disorder prediction 225 284 - -
Amo19g4105 734 Gene3D - 86 170 - -
Amo19g4105 734 MobiDBLite consensus disorder prediction 577 595 - -
Amo19g4105 734 CDD PB1_UP2 70 170 - -
Amo19g4105 734 ProSiteProfiles PB1 domain profile. 66 172 IPR000270 GO:0005515
Amo19g4105 734 PANTHER OS05G0427100 PROTEIN-RELATED 29 725 - -
Amo19g4105 734 MobiDBLite consensus disorder prediction 369 455 - -
Amo19g4105 734 PANTHER EXPRESSED PROTEIN 29 725 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4105 Amo-Chr19 157463517 157466432 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4105 43 200 MAP Kinase Kinase Kinase AT3G46920 35.542 1.11e-25 111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4105 19 157463517 157466432 Amo19g4105 19 157463517 157466432 ECH