Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4089 ATGTATAAATTTGTTGTATTGGTTTTCATACTTGTGGTGGCCGCAGCCACCGGAGAGAGAAGAGAATGTCCAGCTTCATTCAATTGTGGAGATAATATTGGGAACTTCAGCTTCCCTCTCACTACAGCAGAGCGTCAGGAGTGTGGCCTTTTGGCCATAAACAATTGTTATGAGCCAGCGCAGGTGGATAGATGGGTGCAACTAAGTGATGAAGGCAAAACATTTTTAGTTATACGTGTATCTCAACAGAATTTTACTAGTATTCAATTCAGAGATAAGGACTTATACGATCTTCTGCAATCAAGAAATTGTAATGCCTTCAGATATAACTATACTCTTTCTACTCCTCCCACCTTTCATCATTTTGCTTCCCTTTATATGGAATACAATACAACCCTCTACACATGCAACCGTACCCTCCATTTCCCCCCAACTAGGAACATGTTCAGTTATGCAAATTGCACTGGCATCGATATCTACTACGGCCTTTTCATGCGCACACCACAAATTCAGAGTTCGTTGGCCTCATGCACAAAGGTCTTGCTTCCAATCAAAGATGTTCCTGATGGCAATGATCCCTTCACATTCGTAAATGCTGATATCAATGCTAAGGTCATTTTGTCGCAAGAATGCACAGACTGTCACTATAAGCAAAGAGGCCAGTGCCAACTTGACAGCAAAAGCAAATTTTGTTGTGCCAACGTTAGGCACACGGAAAACACAAGCACAAGTAGTAGAAGTTGGGTTGTCATGAATATGAGACTAGCACTTGGACTGGCTTTATCCATTGTTGCTGCGTTGCTGTTGCTTTCGGTTTGCTGCTTAAGGAGAAAGCTTTTCACCCTTACTATATGTTGCTTTTGGAATAAAACTCGATCAACCGGTGAAATAATCATTGAATCCTTTTTGAAGCAACATGGTTCTCTTCCAACCAGACGGTACAAATATTCTGAGATAAAGAAATTCACTGATGATTTCAAAGTCAAATTGGGACGGGGAGGATATGGCACCGTGTATAAAGGAAAGCTACAAGATGATAGTCTTGTTGCTGTTAAGGTTTTAAGTGAAGTGAAGGGAACTGCAGAGGAATTCATCAATGAAGTTGCAAGTATTAGTAGGACATCTCATGTTAACATTGTTAGTCTTGTGGGATTTTGTTTTCAAGGTTCCAAAAGAGCTCTAATCTATGAATTTATGCCTAAGGGATTCCTTGAAAAGTTCATATGTGAGGAAAATTCAACTACAGTTGGTCGCCAATTGGATTCCAGAAGTCTCTATGACATTGCAGTTGGTGTAGCGCGTGGATTAAATTATTTGCATCGAGGCTGCAATACCAGAATCTTGCATTTTGACATAAAGCCTCATAACATACTACTCGACAAGGATTTTTGTCCAAAGATTTCAGATTTTGGACTCGCCAAGATATGTCCAAGAAAAGAGAGTATTGTTTCCATGTCGTGTGCAAGAGGAACTATTGGATTTATTGCTCCAGAGTTGTTTTCAAGGAATTTTGGTGGAATATCTCACAAGGCAGATGTTTATAGTTATGGAATGATGGTTTTAGAAATGGTTGGAGGAAGAAACAATAAAAATGTGGAAGTTGATCGTTCTAGTGAGCTGTATTTTCCACATTGGATTTACAAGCGACTTGAACTAGATGAGGAGTTAGGATTGCGGTGTATCAAGAAGGAAAGCGATAGGGAAATAGTGAGAAAGATGACATTGGTGAGCTTGTGGTGCATACAGACTAATCCTTTGTACCGTCCGTCAATGAGTAAGGTGGTGGAGATGCTTGAAGGAAGCTTGGAATCATTTGAATTGCCGCCTAGGCCCTTTTTCAGTTCTTCTCCAACATCGCCAATTAATTACTCAAGTCATACATCTGAAAGTTTGTAA 1896 0.4003 MYKFVVLVFILVVAAATGERRECPASFNCGDNIGNFSFPLTTAERQECGLLAINNCYEPAQVDRWVQLSDEGKTFLVIRVSQQNFTSIQFRDKDLYDLLQSRNCNAFRYNYTLSTPPTFHHFASLYMEYNTTLYTCNRTLHFPPTRNMFSYANCTGIDIYYGLFMRTPQIQSSLASCTKVLLPIKDVPDGNDPFTFVNADINAKVILSQECTDCHYKQRGQCQLDSKSKFCCANVRHTENTSTSSRSWVVMNMRLALGLALSIVAALLLLSVCCLRRKLFTLTICCFWNKTRSTGEIIIESFLKQHGSLPTRRYKYSEIKKFTDDFKVKLGRGGYGTVYKGKLQDDSLVAVKVLSEVKGTAEEFINEVASISRTSHVNIVSLVGFCFQGSKRALIYEFMPKGFLEKFICEENSTTVGRQLDSRSLYDIAVGVARGLNYLHRGCNTRILHFDIKPHNILLDKDFCPKISDFGLAKICPRKESIVSMSCARGTIGFIAPELFSRNFGGISHKADVYSYGMMVLEMVGGRNNKNVEVDRSSELYFPHWIYKRLELDEELGLRCIKKESDREIVRKMTLVSLWCIQTNPLYRPSMSKVVEMLEGSLESFELPPRPFFSSSPTSPINYSSHTSESL* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4089 631 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524
Amo19g4089 631 ProSiteProfiles Protein kinase domain profile. 324 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4089 631 Pfam Protein kinase domain 327 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4089 631 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 3 626 - -
Amo19g4089 631 SUPERFAMILY Protein kinase-like (PK-like) 307 599 IPR011009 -
Amo19g4089 631 Gene3D Phosphorylase Kinase; domain 1 301 398 - -
Amo19g4089 631 Gene3D Transferase(Phosphotransferase) domain 1 399 609 - -
Amo19g4089 631 PANTHER RUST RESISTANCE KINASE LR10-RELATED 3 626 IPR045874 GO:0004672
Amo19g4089 631 SMART serkin_6 324 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4089 631 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4089 Amo-Chr19 157268313 157270670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4089 2 617 Receptor kinase-like Gene Family AT5G38260 37.288 9.20e-126 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Amo19g4089 Pkinase 2e-42 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4089 19 157268313 157270670 Amo19g4089 19 157268313 157270670 ECH