Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4086 ATGAACCAAGACATCATCACCTTCTTCTACTGTTGTGTTATCATTAACATCATCCTCTTGTGTGTGCTTAGCAGAACCAGTTTGTGCGCTTATGTGGATCCACACTACCTGGCATGTGAACCCCAAATATGCGGCAACCAATCCATAAGATACCCCTTCTACATCCAAGGCAAGCAGCAACCTTTCTGTGGCTACCCTGGTTTTGCCATCTCTTGTGCTGATGGTATTCATGGCTTCCCAACGCTCAATCTCTCCAATACTTCTTACATCATCCATCAAATATTCTACCACAACGAATCACTCAGAGTCTCCAATGCTGCCTTCTCATCAAATACTTCTTGTATTTCTGCTACACACAACCTCACCCTTCCTCCAACCAAGACCTTCAGTTTTCTTAATCGGAATCATAATAAGGACATCTTACTGTTCTTCGGATGTAATCTGTCATCCATGCCTAGAGAGTTGATAGATTACAGAATTGGGTGTTCTGAAGCGACCAACAAAACGGGTGGTTCGGTTCTGGCATTGTATAAGGACGATGTCAAAACAGTAAGATCGGTCTCCAAGAGTTGCGGGAGTGGCAGAAAGGTGGTGGATACGGTGGTGGAAGGGAGTGAAGGAAGAGGAGGGATGGAAGAGGAGCTGAGGAGAGGGTTCATGCTGAATTGGACAGCGGGTGATTGCAAGTTGTGCAATAGCACAGGAGGAAGGTGTGGCTTCGATTCAACTATATTCACATTCCAGTGTTACTGCACTGATCGAATTCATGCTTTCAAATGTGATATTATAGTTGCAGAACGTAGAAGCAACGCTTCCATGAAGATTGGACTTGCACTTGGACTAGCTGCTGCAGTTACTCTGCTGTTAGTAACGGTCACCCTCTACTACACACGATGGAAGAAGCAAAACCCGAAACACTTTCTGGTTGATGACTTTTTGGAGAAACATGGCCCCCTTCAAATAAGGAGATATACTTATTCAGAGATGAAGAAGGTGACCAACTCCTTCAGAGACAAACTAGGCCAAGGAGGGTTTGGCACTGTATACAAAGGACAATTGCAGGACGGACGCCATGTTGCAGTGAAGATCCTAAGTGAACTGAAAGGTGATGGTGAAGATTTCATCAATGAAGTTGCGAGTATGAGCAGAACTTCTCACGTTAACATTGTTGCTCTTCTTGGGTTCTGCTTTCAAGGTTCCAAACGAGCTTTGGTTTATGAATTTATGCCCAATGGATCGCTTGAGAAGTTAATCTATAAAGAAAATACTGTGATAGGGGATCACCAATTGGATTGTCAAACTTTATATGATATTGCAATTGGTGTTGCTCGAGGACTTGAGTATTTGCACACGGGCTGCAATACTAGAATCTTGCATTTTGACATAAAGCCCCATAACATTCTCTTAGATGAAAATTTTTGTCCCAAAATTTCAGATTTTGGACTTGCAAAAGTTTGCACTAGAAAAGAAAGTATTGTATCAATATTTGGTGCTAGAGGAACTGCAGGCTATATTGCTCCAGAGGTATTTTCTAGGAATTTTGGTGCAGTATCTCACAAGTCAGATGTTTATAGTTATGGAATGATGGTTTTAGAAATGGTTGGACGAAGAAGGAATATCAAAGTTGAAGTTGATGCATCTAGTGAGTTATATTTCCCTCATTGGATATATAATCGCCTTGTGTCAAATCAAGAACTTGGTTTGCGAAGTATAAGAAATGAGTGTGAAAATAAGATGGTAAAAAAGATGACTATAGTGAGCTTATGGTGCATTCAAGCCAATCCTTCAATTCGACCATCAATAAGTAAAGCGGTGGAAATGCTGGAAGGAAGAGCTGAATTGTTGCAAGTGCCACCTAAACCATTTTGGTTTTCTCCTTCAACATCTCCCTGA 1893 0.4168 MNQDIITFFYCCVIINIILLCVLSRTSLCAYVDPHYLACEPQICGNQSIRYPFYIQGKQQPFCGYPGFAISCADGIHGFPTLNLSNTSYIIHQIFYHNESLRVSNAAFSSNTSCISATHNLTLPPTKTFSFLNRNHNKDILLFFGCNLSSMPRELIDYRIGCSEATNKTGGSVLALYKDDVKTVRSVSKSCGSGRKVVDTVVEGSEGRGGMEEELRRGFMLNWTAGDCKLCNSTGGRCGFDSTIFTFQCYCTDRIHAFKCDIIVAERRSNASMKIGLALGLAAAVTLLLVTVTLYYTRWKKQNPKHFLVDDFLEKHGPLQIRRYTYSEMKKVTNSFRDKLGQGGFGTVYKGQLQDGRHVAVKILSELKGDGEDFINEVASMSRTSHVNIVALLGFCFQGSKRALVYEFMPNGSLEKLIYKENTVIGDHQLDCQTLYDIAIGVARGLEYLHTGCNTRILHFDIKPHNILLDENFCPKISDFGLAKVCTRKESIVSIFGARGTAGYIAPEVFSRNFGAVSHKSDVYSYGMMVLEMVGRRRNIKVEVDASSELYFPHWIYNRLVSNQELGLRSIRNECENKMVKKMTIVSLWCIQANPSIRPSISKAVEMLEGRAELLQVPPKPFWFSPSTSP* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4086 630 ProSiteProfiles Protein kinase domain profile. 334 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4086 630 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 17 630 - -
Amo19g4086 630 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672|GO:0006468
Amo19g4086 630 Pfam Wall-associated receptor kinase galacturonan-binding 39 104 IPR025287 GO:0030247
Amo19g4086 630 Pfam Protein kinase domain 338 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4086 630 PANTHER RUST RESISTANCE KINASE LR10-RELATED 17 630 IPR045874 GO:0004672
Amo19g4086 630 Gene3D Transferase(Phosphotransferase) domain 1 409 620 - -
Amo19g4086 630 Gene3D Phosphorylase Kinase; domain 1 311 408 - -
Amo19g4086 630 SUPERFAMILY Protein kinase-like (PK-like) 317 609 IPR011009 -
Amo19g4086 630 SMART serkin_6 334 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4086 630 Pfam Wall-associated receptor kinase C-terminal 186 253 IPR032872 -
Amo19g4086 630 ProSitePatterns Protein kinases ATP-binding region signature. 340 362 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4086 Amo-Chr19 157253937 157262301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4086 14 621 Receptor kinase-like Gene Family AT5G38260 41.379 1.57e-142 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Amo19g4086 Pkinase 2e-45 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4086 19 157253937 157262301 Amo19g4086 19 157253937 157262301 ECH