Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4081 ATGGCGGCAACAAGTCACCTCGTTGCTCACGCTGCCTTGTTCCTCTCTCTGGTTTTTCACATGCATCTTCTGGTTAGCGGCTCTACCAGCCAAGATAAAGAGGCTCTTTTGGCCTTCAAAGCTGGTTCAGACGCGTCGGAGAAGTTAACGAGTTGGAACAACAGCACCAACCTGTGCAGCTGGGACGGTGTCTCCTGCATCAACAACCGAGTCACGCGACTCGTTCTGGAGAACCTCGACCTCCAAGGTTCCATTCAACCATTAACTTCACTCACTCAACTGCGAGTTCTCAGCCTCAAGCGAAACCGTTTCTCTGGAACCCTTCCTTCTCTCTCTAACTTCACCGCCCTCAAGCTTCTCTTCCTCTCTTACAACCACTTCTCCGGTGACTTTCCAGCCACAGTGACCTCTCTCTTCCGCCTCTATCGTCTCGATCTGTCCCACAATAACCTCTCCGGCGAGATTCCGGCGACAGTCAACCACTTAGCCCACCTTCTCACTCTCCGTCTCGAGGAGAACCGTTTCTCTGGCTACATTCCTGGCGTCAACCTCCCAAACCTGCAAGACTTCAACGTCTCCGGGAACCTCCTCTCCGGCGAGATACCGAAGTCGCTCTCGGCTTTCCCCGTATCCTCGTTCGGGCAAAACCCTTCTCTATGCGGAGCCCCGATTCAGAACTGCACCGGAGTGGTGCCTGACCCTACAAAACCCGGATCCGAGGGCGCCATTGCGTCCCCAGTGGTGCCACGTGGCGGCGCCACAACAACAGTGTCATCTTCCCCGAGTTCAATGCCAGCAAACGACGGTGGAGCAGCTCCAAAAACATCGAAAACACATAGAAACGGAGGTTCGAAGATAAGCCCGGTGGCTCTAATAGCCATAATTGTGGGCGATGTATTGGTACTGGGCATTGTGTCATTGCTTCTATATTGCTACTTCTGGAGGAACTACTCGGCGAAGTTGAAGGAAGGGAAAGGGTCAAAGCTTTTCGAGAGCGAGAAGATTGTGTATTCTTCGAGTCCGTACCCTGCACAAGGAGGAGGAGGAGGGTTTGAGAGGGGGAAAATGGTGTTCTTCGAAGGCGAGAAGAGGTTCGAATTGGAGGACTTGCTTCGAGCGTCTGCTGAGATGCTGGGAAAAGGTGGGTTCGGAACGGCGTACAAAGCGGTTCTTGATGATGGGAACGTTGTTGCGGTGAAGAGGCTGAAAGATGCGCAGATTGGAGGGAAGAGAGAGTTCGAGCAGCACATGGAGCTTCTTGGAAGGTTGAGGCATCAGAATATCGTGAGCTTGAGGGCTTACTATTTTGCCAGAGATGAGAAGTTGTTGGTCTACGATTACATGCCCAATGGAAGCTTGTTCTGGCTCCTTCATGGGAACCGAGGACCGGGGAGAACCCCACTGGACTGGACCACTCGGCTCAAGATAGCAGCTGGAGCGGCGCGTGGCGTGGCCTTCATTCACAACTCGTGTAAGTCCCTCAGGCTCAACCACGGAAACATCAAATCCACCAACATTCTCTTAGACAAGCAGGGAAACGCCCGGGTATCAGATTTTGGGCTCTCCGTGTTCGCGGGCCCAGGCCCATCAACATCTGGTGTCAGATCCAACGGCTATCGTGCTCCCGAGGTGTCATCTGACGGTCGAAAACAGTCCCAAAAGTCTGACGTGTACTCGTTCGGTGTATTCTTGCTTGAGTTGCTGACGGGGAAGTGCCCCTCGGCGGTGGAGGGTGCTGGTGCGCCCGCGGTGGACCTGCCAAGGTGGGTCCAGTCCGTTGTGAGGGAGGAATGGACCGCTGAGGTATTTGATTTGGAGCTGATGAGGTACAAGGACATTGAAGAGGAGATGGTTGGGCTGTTGCAGGTTGCTATGGCGTGCACTGCCCCTGCACCTGATCAACGGCCTAGCATGAGCCACGTGGTCAAGATGATCGAGGAGTTGCGTGGGGTCCAGGTGTCACCGTGTCATGACACGTTGGACTCTGTGTCTGAGTCACCTTCCGTCTCCGAAGATGCATGTGGAGCTAGTCAGTGA 2037 0.5415 MAATSHLVAHAALFLSLVFHMHLLVSGSTSQDKEALLAFKAGSDASEKLTSWNNSTNLCSWDGVSCINNRVTRLVLENLDLQGSIQPLTSLTQLRVLSLKRNRFSGTLPSLSNFTALKLLFLSYNHFSGDFPATVTSLFRLYRLDLSHNNLSGEIPATVNHLAHLLTLRLEENRFSGYIPGVNLPNLQDFNVSGNLLSGEIPKSLSAFPVSSFGQNPSLCGAPIQNCTGVVPDPTKPGSEGAIASPVVPRGGATTTVSSSPSSMPANDGGAAPKTSKTHRNGGSKISPVALIAIIVGDVLVLGIVSLLLYCYFWRNYSAKLKEGKGSKLFESEKIVYSSSPYPAQGGGGGFERGKMVFFEGEKRFELEDLLRASAEMLGKGGFGTAYKAVLDDGNVVAVKRLKDAQIGGKREFEQHMELLGRLRHQNIVSLRAYYFARDEKLLVYDYMPNGSLFWLLHGNRGPGRTPLDWTTRLKIAAGAARGVAFIHNSCKSLRLNHGNIKSTNILLDKQGNARVSDFGLSVFAGPGPSTSGVRSNGYRAPEVSSDGRKQSQKSDVYSFGVFLLELLTGKCPSAVEGAGAPAVDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQVAMACTAPAPDQRPSMSHVVKMIEELRGVQVSPCHDTLDSVSESPSVSEDACGASQ* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4081 678 MobiDBLite consensus disorder prediction 236 281 - -
Amo19g4081 678 PANTHER - 28 664 - -
Amo19g4081 678 Pfam Protein kinase domain 376 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4081 678 MobiDBLite consensus disorder prediction 529 550 - -
Amo19g4081 678 Gene3D Transferase(Phosphotransferase) domain 1 448 663 - -
Amo19g4081 678 SUPERFAMILY Protein kinase-like (PK-like) 376 645 IPR011009 -
Amo19g4081 678 ProSitePatterns Protein kinases ATP-binding region signature. 378 400 IPR017441 GO:0005524
Amo19g4081 678 MobiDBLite consensus disorder prediction 659 678 - -
Amo19g4081 678 Gene3D Ribonuclease Inhibitor 25 89 IPR032675 -
Amo19g4081 678 Gene3D Ribonuclease Inhibitor 90 231 IPR032675 -
Amo19g4081 678 Pfam Leucine rich repeat N-terminal domain 30 66 IPR013210 -
Amo19g4081 678 Gene3D Phosphorylase Kinase; domain 1 352 447 - -
Amo19g4081 678 MobiDBLite consensus disorder prediction 251 266 - -
Amo19g4081 678 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 28 664 - -
Amo19g4081 678 CDD STKc_IRAK 378 648 - -
Amo19g4081 678 ProSiteProfiles Protein kinase domain profile. 372 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4081 678 SUPERFAMILY L domain-like 50 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4081 Amo-Chr19 157199758 157202633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4081 32 677 Receptor kinase-like Gene Family AT1G68400 67.123 0.0 831
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Amo19g4081 Pkinase 9.7e-39 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4081 19 157199758 157202633 Amo19g4081 19 157199758 157202633 ECH