Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4077 ATGGACAACCAACTTGACTCACAACCACCACCACAACCCGCGCGCTTAAAGCTATTTGGCTTCAGCGTCCATGAAGACTCCACCATGGAAGAAGAATTACTACTCATGCATGAAGACGTAGCAGATTCAACAACAAAACCATCACCTTCTTCCACCTCCCCCTCTAGGTCGCCGGATTCCGCCGGAGCCGCTGCAGGAGCCAGCGGCGGTTTTGCGTCCTCCTCTTCCGGGGAGCGGAAATACGAGTGTCAGTACTGTTGCAGAGAGTTCGCAAATTCACAAGCACTTGGTGGACACCAAAACGCGCACAAGAAAGAGCGTCAACAGCTCAAGCGAGCACAGTTACAAGCCACGCGAAACGCCGCCGCCGTTTCCTTCGTCAGAAACCCCATCATCTCCGCCTTCGCACCACCGCCGCACCTGCTTGCTCCGCCGGGGTCCATGGTCATGCCGGCGCCACCTCCATCGTGGGTGTACATGCCGCCGCGTGCAGCTCCTCCTCCGTTCCACGTGTCAGTATCTCACGGGTGCGTGTTCCCTTCGGCGAACAGCAGTAATAATAGTAGCAACTACAGTTACGGTAACGGTAACGGTAACAGTAACGGTAATTGTAGCATTAAAAATGGGGGTGTAGGGTTCCCCTATGGTGGCGGTGTAGGGGAACCGTCAAGTGCATTGTCAACGATGATGGGGTCGCAGATGCAAGTGCAGGTACAGGCCCGGGCCCACCATGGCAGGATGGACGGGTCCTCTTTGAGTAGGTTCTCCAAAGGAGATGGTGGGCCCAGTTTTGATGATTCATTGGGCTTGGACTTGCACCTTAGCCTTGCACCAGCTGCGCCGTAA 846 0.5556 MDNQLDSQPPPQPARLKLFGFSVHEDSTMEEELLLMHEDVADSTTKPSPSSTSPSRSPDSAGAAAGASGGFASSSSGERKYECQYCCREFANSQALGGHQNAHKKERQQLKRAQLQATRNAAAVSFVRNPIISAFAPPPHLLAPPGSMVMPAPPPSWVYMPPRAAPPPFHVSVSHGCVFPSANSSNNSSNYSYGNGNGNSNGNCSIKNGGVGFPYGGGVGEPSSALSTMMGSQMQVQVQARAHHGRMDGSSLSRFSKGDGGPSFDDSLGLDLHLSLAPAAP* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4077 281 MobiDBLite consensus disorder prediction 1 20 - -
Amo19g4077 281 MobiDBLite consensus disorder prediction 240 260 - -
Amo19g4077 281 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Amo19g4077 281 PANTHER ZINC FINGER PROTEIN GIS3 10 281 - -
Amo19g4077 281 SUPERFAMILY beta-beta-alpha zinc fingers 77 108 IPR036236 -
Amo19g4077 281 PANTHER ZINC FINGER PROTEIN 5 10 281 IPR044299 GO:0010090
Amo19g4077 281 MobiDBLite consensus disorder prediction 43 59 - -
Amo19g4077 281 MobiDBLite consensus disorder prediction 29 76 - -
Amo19g4077 281 Gene3D Classic Zinc Finger 71 130 - -
Amo19g4077 281 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 108 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4077 Amo-Chr19 157157464 157158901 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4077 3 279 C2H2 Transcription Factor Family AT1G68360 43.793 6.63e-58 184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4077 19 157157464 157158901 Amo19g4077 19 157157464 157158901 ECH