Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4010 ATGGTAACCGATTCCCACGACTCTCGTCGCAAGCATCGCCGATCCTCCTCTCCGGAAGACGCCGATAGATCCTCGAAGCGCCACAAGCACCGCCACCATAGCCACCGCCATCGCCACTCCACCAAGAAACGCGATGAAGACACCGAATACGATCGCGGAACTCTTGCTAGGATTCCTTCTCCAGCTCCTGTTTCTAACTCTGCTCCGTATAGCTCTCTCCCTGACGACGACGTCGAGGAGGGAGAGATTCTCGAAGAAGGTGAGATTGGAAAAAAGCAGACAGAATCTGATGCAGAGCCTGGTGAAATTGAGCTGTCAGGAAATCGAGATTCTCGATCCGATAACAAAATTCCGGGACCTGTCACAAAAAATTCAAAAACTGGAAAGGAGGACAGAAGTCATGGTAAATATGTTAGTCCTGCATTGGATACTGCAGACAAGCACCCTGGACTTCATGATGACTATGGTTCTCCTAACCAGTCAAGCCCTGAGCTGAAAGGTGGAAAGAATGCTAGAGATACTAAAGATGGTTTGGGTAATGGGTATTTGAACCCTAAATCATCCAAAGAAGATAAGAAGCAGAATGAGGGCCCTGGACAATTGAGAGGAAATGAGAAACTAAAAGGTGACTATGAAGAGAAAGAGATACAGGCAAATGGAATAAAACATAATTACCATACAAATTCATCATCTGATAGTGAAGGTGAAAAATATAGAATGTTAAGAAGTTCTCCTTCTCATGATAGATGTAGAAGTCGATCAAGATCAAGTGGTCATCCTAGGGACAGATCTCGTTCTCGTAGTATAGCAGATGAATATGCTCATTCCAAGAAAAGGCACTCTAGGGATCAAGGGTCCCTTCATCATAGTGGCAGAGATAAGACTGACTATGAGCATGATGAGGAAGGAATGAGAGCACGTGGAAGGGAGCATGGTCGTGGCAATGCAGACTTGTTGGTAGATGACAGGAGGGGACGTAGTTCCAGGTATCGTAGTCGAGAGTCCCAGGATCGCAGTAGGGACAGTCATGTGGATAGGGATTTATACAGGGAAAAGAAACGAGACGAAACAAGCAGGAATAGGGAGGTTGATTGGGTGCGTAAAACAGAAAAGGAACGTGAAAGGAGCTATGAGAGGGATAGAAGGGACACAATAAAAGACAGAAGTAGGGAAAGGGAGGAGGATAGGGATAGGAGACGAGAAAAGGAGAGAGGCTGGAGCAGGGAAACAGATTTTGAGAGGGATAGAAGAAGGGGAAAGGAAAGGGACAGGAGTAGGGATAATACAAGGGGTGGTGAGAGAGGAAGAGATTGGGATAGTGAAAGGGATGATAAGAATCGGGAAAGAGATCACATTAAGGAGAGGGAGAGGCGAGATGATAGATATAGGCACACTGATAAAGACACCGCATATAATAAGGATAAGCATTTGCGTCATGAGGATGGTGAAGACATTCGAGACAGATATAGAAAACATTCAAGACACGAAGAAACTGAATATCATCGGGAGAGAAACAGGAATTCTGATTCTGTAAAATTTTATAATTCTGCAAGAAGTGCCATGGAAGAGAATGAAAGCAAGCTAGAAAGAGGTGAGGCTGAACAAGATTACTTAGATGAGGATACTCTGCAATTACCAGAGCAAGAAGAGGAAGATCTGAATAGGATTAAGGAGGAAAGTAGACGGAGAAGGGAAGCAATAATGGAGAAATACAAGAAGCAGCATCAGCAAGCAGAACAGGCAGCTGAAAATGAAGGAAAAGACAAGGAATCCGTGGACATTCCTACTGATGTTCCTGAAGCACATGATGGCAAGAATGATGGTATTGATGATGTAGAAACATCATTTGCTGTTGGGAAATCTACTCCTGAAAATTTGAATGGTGCTTCTAAGAAGATATCTGGTGCTGGTGGCCTGGGTGAGGGTACTCCTAAGAGTGAAAGATCAGACGACATGTTTTGTGATGATATATTTGGTGAGACACCAACTGGAGTTCGGAAATCAGGAAAAGGGGATGGTATACTGATTGAGAGGGTTGGCCTACATGACAATTGGGATGACGCAGAGGGGTATTACAGCTATCGTTTTGGTGAAATACTTGATGGCCGATACGAAGTCACTGCTGCACATGGGAGGGGTGTTTTTTCAACAGTGGTTCGGGCAAAGAATCTCAAGACTGGTAATGGTGAGCCAGATGAAGTTGCTATAAAAATCATTCGTAATAATGACACCATGTACAAGGCTGGTATGGATGAGTTGGTCATACTGAAGAAATTAGTAGGTGCAGATCCAGATGATAAGCGTCATTGTGTTCGTTTCCTTTCAAGTTTTAAGTACAGGAATCACCTCTGTTTAGTTTTTGAATCTCTTAATATGAATCTGCGTGAAGTATTAAAGAAGTTTGGTCGCAATATTGGCCTTAGGCTAACAGCTGTGAGAGCATATGCAAAGCAACTATTTATTGCCCTGAAGCATCTTCGGAACTGTGGTGTTCTTCATTGTGATATAAAGCCTGATAATATGTTGGTGAACGAGGCTAAAAATGTCTTGAAGCTTTGCGACTTTGGTAATGCTATGTTTGCTGGTAAGAATGAAGTCACACCATATCTTGTCAGTCGGTTTTATCGGGCCCCTGAAATAATTCTTGGCTTGCAATATGATCATCCGTTGGATATTTGGTCAGTAGGCTGTTGTTTGTATGAGCTCTATACAGGGAAAGTTCTTTTTCCAGGTCTTACAAACAATGACATGCTTAGGCTTCACATGGAATTAAAGGGTCCTTTTCCAAAGAAGATGCTGCGTAAGGGAGCATTCACTGACCAACATTTTGATCAGGACCTGACTTTTCTTGCTACTGAAGAGGATCCTGTGACAAAAAAGGATCCAAAGATGTTAGCCAACTTCAAGGATCTCATGGATAAAATTTTTATCTTGGACCCAGACAAGAGGTTGACGGTATCACAAGCACTGAACCACCCGTTTATCACTGGCAAGTGA 2997 0.4334 MVTDSHDSRRKHRRSSSPEDADRSSKRHKHRHHSHRHRHSTKKRDEDTEYDRGTLARIPSPAPVSNSAPYSSLPDDDVEEGEILEEGEIGKKQTESDAEPGEIELSGNRDSRSDNKIPGPVTKNSKTGKEDRSHGKYVSPALDTADKHPGLHDDYGSPNQSSPELKGGKNARDTKDGLGNGYLNPKSSKEDKKQNEGPGQLRGNEKLKGDYEEKEIQANGIKHNYHTNSSSDSEGEKYRMLRSSPSHDRCRSRSRSSGHPRDRSRSRSIADEYAHSKKRHSRDQGSLHHSGRDKTDYEHDEEGMRARGREHGRGNADLLVDDRRGRSSRYRSRESQDRSRDSHVDRDLYREKKRDETSRNREVDWVRKTEKERERSYERDRRDTIKDRSREREEDRDRRREKERGWSRETDFERDRRRGKERDRSRDNTRGGERGRDWDSERDDKNRERDHIKERERRDDRYRHTDKDTAYNKDKHLRHEDGEDIRDRYRKHSRHEETEYHRERNRNSDSVKFYNSARSAMEENESKLERGEAEQDYLDEDTLQLPEQEEEDLNRIKEESRRRREAIMEKYKKQHQQAEQAAENEGKDKESVDIPTDVPEAHDGKNDGIDDVETSFAVGKSTPENLNGASKKISGAGGLGEGTPKSERSDDMFCDDIFGETPTGVRKSGKGDGILIERVGLHDNWDDAEGYYSYRFGEILDGRYEVTAAHGRGVFSTVVRAKNLKTGNGEPDEVAIKIIRNNDTMYKAGMDELVILKKLVGADPDDKRHCVRFLSSFKYRNHLCLVFESLNMNLREVLKKFGRNIGLRLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEAKNVLKLCDFGNAMFAGKNEVTPYLVSRFYRAPEIILGLQYDHPLDIWSVGCCLYELYTGKVLFPGLTNNDMLRLHMELKGPFPKKMLRKGAFTDQHFDQDLTFLATEEDPVTKKDPKMLANFKDLMDKIFILDPDKRLTVSQALNHPFITGK* 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4010 998 MobiDBLite consensus disorder prediction 186 220 - -
Amo19g4010 998 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 338 998 - -
Amo19g4010 998 Coils Coil 204 224 - -
Amo19g4010 998 SUPERFAMILY Protein kinase-like (PK-like) 691 997 IPR011009 -
Amo19g4010 998 Coils Coil 514 534 - -
Amo19g4010 998 MobiDBLite consensus disorder prediction 548 610 - -
Amo19g4010 998 MobiDBLite consensus disorder prediction 26 40 - -
Amo19g4010 998 MobiDBLite consensus disorder prediction 1 25 - -
Amo19g4010 998 ProSitePatterns Serine/Threonine protein kinases active-site signature. 831 843 IPR008271 GO:0004672|GO:0006468
Amo19g4010 998 ProSiteProfiles Protein kinase domain profile. 704 995 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4010 998 PANTHER DUAL SPECIFICITY PROTEIN KINASE 338 998 - -
Amo19g4010 998 MobiDBLite consensus disorder prediction 85 111 - -
Amo19g4010 998 CDD STKc_PRP4 703 995 IPR044092 GO:0004674|GO:0006468|GO:0045292
Amo19g4010 998 Gene3D Transferase(Phosphotransferase) domain 1 764 996 - -
Amo19g4010 998 Coils Coil 561 588 - -
Amo19g4010 998 MobiDBLite consensus disorder prediction 229 509 - -
Amo19g4010 998 Gene3D Phosphorylase Kinase; domain 1 674 763 - -
Amo19g4010 998 SMART serkin_6 704 995 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g4010 998 MobiDBLite consensus disorder prediction 1 651 - -
Amo19g4010 998 Pfam Protein kinase domain 706 995 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4010 Amo-Chr19 156126329 156132481 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4010 711 992 Core Cell Cycle Gene Families AT1G66750 32.082 1.78e-30 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Amo19g4010 Pkinase 1.8e-48 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4010 19 156126329 156132481 Amo19g4010 19 156126329 156132481 ECH