Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4005 ATGGCAATGGCCAAGCTTGCCATATACAGCAATAATAATACCATTTTCTTACGTGAAATCATGCCTCTGCTGCTGCCCTATACATACTCTTCACACCATGCACTCTCATTTCAGGTTCCAATGGCTCCTCTGTTTTCCGTCATCGTCCTCTTCATCATCATCATCTGTGATTCCCCGTTGGCACACTCTCGCACCACACCCCATCACATACCTAAAACCACGTTCCTCGATGTCACTGCCTCCATTCAAAAAACCCTTCAAGTTCTCGACTTCAACCACCACAAACAACAAGAGCAACTCAGTTCTACGCCATCATCAAAGCTCTCTCTGCATCTTCATTCTCGAGTATCACTTCAGAAGCCAACACACCACGACTACAAGTCCCTCACTTTATCCCGACTCGAGCGCGACTCAGCCCGAGTCACGACCCTCCTAACTCGTTCACAATCCTTCAGCGTCTCGGAACTTGAGGGACCCATCGTCTCCGGAACTAGTCAGGGAAGCGGCGAGTACTTCTCCCGAGTCGGAATCGGCGAGCCACCGAATCCTGTCTACATGGTCCTCGACACTGGCAGTGACATCAGCTGGGTGCAATGCTCACCCTGCTCCGGTTGCTACCGCCAATCCGACCCGATATTCGACCCGAACTCATCGTCTTCCTTTCACCCACTCTCCTGCGACTCAACTCACTGTCAATTGCTCGACGAATCTCAGTGTCTCAACAGCAACTGCCTCTACGAGGTCTCCTATGGCGATGGTTCCTATACCGTCGGTGAATTCGTCACCGAAACCATCACCATTGGCCAAAGCTCCGTCACAAACATCGCCATCGGCTGCGGCCACAACAACCAAGGCTTGTTCATCGGAGCAGCAGGGTTGCTCGGACTCGGGGTGATCATTGATTCGGGGACGGCGGTGACGCGGTTACGGAGGGAGGTGTATGAGTGGCTGAGAAGGGCGTTTTTAAGTGGGACTCAGGGGTTGGCGATGGCGAGAGGGATGTCGTTGTTTGACACGTGCTACGACATGTCGTCGATGGGCAGTGTGGAGGTTCCGACGGTGTCGTTTCATTTTGAAGGTGGGATGGTCTTGACCTTGGATGCTAACACTTACCTGATACCGGTTGACTCCGTTGGCACCTTCTGCTTTGCGTTCGCTCCCACGAACTCGCCCCTGTCCATCATTGGGAATGTTCAGCAGCAGGGGACACGTGTCAGTTTCGATCTCGCTAATTCCCTCGTTGGCTTCTCTGCTAACAGTTGCTGA 1266 0.5276 MAMAKLAIYSNNNTIFLREIMPLLLPYTYSSHHALSFQVPMAPLFSVIVLFIIIICDSPLAHSRTTPHHIPKTTFLDVTASIQKTLQVLDFNHHKQQEQLSSTPSSKLSLHLHSRVSLQKPTHHDYKSLTLSRLERDSARVTTLLTRSQSFSVSELEGPIVSGTSQGSGEYFSRVGIGEPPNPVYMVLDTGSDISWVQCSPCSGCYRQSDPIFDPNSSSSFHPLSCDSTHCQLLDESQCLNSNCLYEVSYGDGSYTVGEFVTETITIGQSSVTNIAIGCGHNNQGLFIGAAGLLGLGVIIDSGTAVTRLRREVYEWLRRAFLSGTQGLAMARGMSLFDTCYDMSSMGSVEVPTVSFHFEGGMVLTLDANTYLIPVDSVGTFCFAFAPTNSPLSIIGNVQQQGTRVSFDLANSLVGFSANSC* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4005 421 Pfam Xylanase inhibitor N-terminal 171 297 IPR032861 -
Amo19g4005 421 Gene3D Acid Proteases 161 266 IPR021109 -
Amo19g4005 421 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 297 421 - -
Amo19g4005 421 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 60 297 - -
Amo19g4005 421 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 186 197 IPR001969 GO:0004190|GO:0006508
Amo19g4005 421 SUPERFAMILY Acid proteases 164 421 IPR021109 -
Amo19g4005 421 Gene3D Acid Proteases 267 421 IPR021109 -
Amo19g4005 421 Pfam Eukaryotic aspartyl protease 298 417 IPR033121 -
Amo19g4005 421 PANTHER ASPARTYL PROTEASES 297 421 IPR001461 GO:0004190|GO:0006508
Amo19g4005 421 PANTHER ASPARTYL PROTEASES 60 297 IPR001461 GO:0004190|GO:0006508
Amo19g4005 421 ProSiteProfiles Peptidase family A1 domain profile. 171 421 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4005 Amo-Chr19 155995883 155997406 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4005 161 297 Miscellaneous Gene Families AT1G77480 33.775 3.16e-16 78.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4005 19 155995883 155997406 Amo19g4005 19 155995883 155997406 ECH