Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3540 ATGGACACCAAATTCTGCTACTACAACAATTACAACGTCAATCAGCCGCGTCATTTCTGCAAGAACTGTCAGAGATACTGGACTGCCGGAGGAACAATGAGGAACGTGCCAGTAGGCGCTGGTCGCCGAAAGAACAAAAACTCTGCTGCATCGCATTATCGCCAGATAATGGTCCCGGAGGCGCTTCAAGCAGCTCACCTCAATGCCCCCAATGGACTACACAATGCTGTCTTGACCTTTGGCCCAGATTCTCCTCTTTGTGATTCCATGTCCTCTGTATTGAACATTGCAGAAAAAGCCACAAATGGTGTTGTAAACGGGTTTCATGCACCGGAGGCAGCAACTACTTTTGTTTCCTATGGTAGGGATGATGATGGGAATGATCACTCAGTSGGAGTTTCTGGTACAACTTCAACTTCATCAGAGAGGAGAGGCCATGCCAGCTCTCATGAATCGGCGGATAAAAGAGTCGAAAGTTTCCCTCCTCAACTAACTTACTTCCCAAGTAATTCTCCATGGCCGTATCCATGGAATTCGCCAATGCCTCCTCCTCCTCCCACATTTTGCCCTCCAGGCTATCCTATGTCGATATACACCACCCCTTCATACTGGGCATGGAATATGCCATGCATCTCACCCCAATCTCCGGCCCCTGGTTCCGGCCCAAATTCGCCGTTGGGGAAACACTCAAGGGATGGTAACATCATAACCCCGGCCAATTCGCAAAAGGAAAAGCCTAACACAGAAAGCAATAATGTGTTGATCCCCAAGACACTTAGAATTGATGATCCTAGTGAAGCTGCAAAGAGTTCAATATGGTCAACACTAGGAATCAAGAATGAGAAGGCCAACTCTCTCAATGGAGGAGGCCTCTTCAAGGCGTTCCCTTCCAAGGGTAACGACAAGAGTCACGTGGTCGAGGCRTCGCCGATGCTGCACGCCAACCCTGCCGCCCTGACGCGGTCTCTCACCTTCCACGAGCGGACCTAG 990 0.498 MDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSAASHYRQIMVPEALQAAHLNAPNGLHNAVLTFGPDSPLCDSMSSVLNIAEKATNGVVNGFHAPEAATTFVSYGRDDDGNDHSVGVSGTTSTSSERRGHASSHESADKRVESFPPQLTYFPSNSPWPYPWNSPMPPPPPTFCPPGYPMSIYTTPSYWAWNMPCISPQSPAPGSGPNSPLGKHSRDGNIITPANSQKEKPNTESNNVLIPKTLRIDDPSEAAKSSIWSTLGIKNEKANSLNGGGLFKAFPSKGNDKSHVVEASPMLHANPAALTRSLTFHERT* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3540 329 PANTHER CYCLIC DOF FACTOR 2 1 329 IPR045174 GO:0003700|GO:0006355
Amo19g3540 329 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 329 - -
Amo19g3540 329 MobiDBLite consensus disorder prediction 119 159 - -
Amo19g3540 329 MobiDBLite consensus disorder prediction 215 249 - -
Amo19g3540 329 MobiDBLite consensus disorder prediction 234 249 - -
Amo19g3540 329 Pfam Dof domain, zinc finger 1 47 IPR003851 GO:0003677|GO:0006355
Amo19g3540 329 ProSiteProfiles Zinc finger Dof-type profile. 1 47 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3540 Amo-Chr19 149505237 149507840 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3540 1 328 C2C2-Dof Transcription Factor Family AT3G47500 47.701 4.65e-76 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Amo19g3540 zf-Dof 8.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3540 - - gmx:100813315 404.445