Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2236 ATGGACACAGCTCAGTGGCCGCAGGAGATTTTGGTGAAGCCAATAGAAGAGATAGTTGTGGGAACAAACACATCATTATGTCATCAATCAAAACCACCCTCTTCTAATAATCTTGCATCAGAGAATAATAACAACAACAACAATATCATCAAGAAACCAAGGCCACAGAAGGAGCAAGCCCTAAACTGTCCAAGGTGCCATTCAACAAATACAAAGTTCTGTTACTACAACAACTACAGCCTTACACAACCAAGGTACTTCTGCAAGACTTGTAGAAGGTACTGGACTGAAGGTGGGTCCCTTAGGAACATCCCTGTTGGTGGTGGATCCAGAAAGAACAAGAGATCTTCTACTTCAATATCATCATCACCGTCACCGCCTTCACCCAACAAGAACATCAAGCTTATTGGTAAGGTAGTCCATGAAGGCCAAGATCTGAACTTGGGTTTTCCATCTGATTTCGTTGTTCATCAACAAAACAATAATACTCTTTCTTCTTCTTCTTCTTCTTCAACTATTACTAGTACTGTTACTACTACTACTACTACACCACCCTCTTCTACTACCCAATTCTCAGCAATGGAGCTTCTTACTGGGATCACTTCAGCAAATTCAAGAGGGGGTTTGGGTTTGAACTCTTTCTTGCCTCATCATCCACCTGATCCAAACACAGTGCTGTACAATAATAGTACTTTTGCTCTTCAGGATTTCAATAAGACAGCAGGATTGAATTTCTCTTTGGATGGGATTGGGATTGGGATTGTAGGGAGTGGATTTGCAGGCCTTCATCATCATCAACAAGATCAGACAAGTGGTGGTGGGAATAATAATGGGAGGCTTTTGTTTCCATTTGAGGATTTGAAACAGGTTTCTAACGCCGACGCAATTGATAATCAGAGTAACAGCAAGGTGCATCAACAACAAGGGGATTCAAGTGGATATTGGAGTGGGATGTTAGGTGGAGGATCATGGTAA 975 0.4174 MDTAQWPQEILVKPIEEIVVGTNTSLCHQSKPPSSNNLASENNNNNNNIIKKPRPQKEQALNCPRCHSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSTSISSSPSPPSPNKNIKLIGKVVHEGQDLNLGFPSDFVVHQQNNNTLSSSSSSSTITSTVTTTTTTPPSSTTQFSAMELLTGITSANSRGGLGLNSFLPHHPPDPNTVLYNNSTFALQDFNKTAGLNFSLDGIGIGIVGSGFAGLHHHQQDQTSGGGNNNGRLLFPFEDLKQVSNADAIDNQSNSKVHQQQGDSSGYWSGMLGGGSW* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2236 324 ProSiteProfiles Zinc finger Dof-type profile. 61 115 IPR003851 GO:0003677|GO:0006355
Amo19g2236 324 MobiDBLite consensus disorder prediction 27 53 - -
Amo19g2236 324 MobiDBLite consensus disorder prediction 27 58 - -
Amo19g2236 324 MobiDBLite consensus disorder prediction 102 132 - -
Amo19g2236 324 PANTHER DOF ZINC FINGER PROTEIN DOF1.8 42 320 - -
Amo19g2236 324 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 42 320 IPR045174 GO:0003700|GO:0006355
Amo19g2236 324 MobiDBLite consensus disorder prediction 110 130 - -
Amo19g2236 324 MobiDBLite consensus disorder prediction 298 324 - -
Amo19g2236 324 Pfam Dof domain, zinc finger 59 115 IPR003851 GO:0003677|GO:0006355
Amo19g2236 324 ProSitePatterns Zinc finger Dof-type signature. 63 99 IPR003851 GO:0003677|GO:0006355
Amo19g2236 324 MobiDBLite consensus disorder prediction 161 187 - -
Amo19g2236 324 MobiDBLite consensus disorder prediction 298 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2236 Amo-Chr19 97779467 97781779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2236 1 324 C2C2-Dof Transcription Factor Family AT4G24060 39.888 4.94e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Amo19g2236 zf-Dof 4.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2236 - - adu:107465965 550.436