Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0175 ATGGATGATTTTTCATGGGAGCATTTGCATCTTCAATTGGAAATGGATGATGAGAATATGAACAATAATAATGGCGTTGATGATGATAATAATGAAGATGATGATGAGTTCTTAAGAGAAATCCTAATGTTGCAACCATCTTTCTCTTCTGAAAATAGTGAAAGTGATAATCTCCAAAACACCGTTGGATCATCATCATCACCGGTTATTGAAGAAGTGCCGCAAGATCTGACGGCTGAGAATTCAAACAACAAGAACAAGAAGAATAATACTATGAAACAACCTCGTAGATCATCATCATCATCATCACTACGTTGTTCTTCTCCGAGGAGATACATTTTGTCGTTTGATAACTCAACCATGACACCAGCTACACCAAATCAATTACAAGAAGACCCTTATTATGCAAACAATAATAATAATAATCATAAGAACAAGAAGAACAAAGATCCATCATCATGTGATTATTCTTCTCCAAAAAGGGTGGTGCCGATTTGTACTAATAATAGTGAGAATAAAAAGGAGGAAGGTGCAATAACAACAAAGAGGGCAAGAAGCTCTTCACAAACAATGGATCACATCATGGCAGAGAGAAAGAGGAGACAAGAACTCACTGAGAGGTTCATAGCACTCTCAGCTACCATCCCTGGCTTGACTAAGACAGACAAGGCATCAATACTTAGAGCAGCCATAGATTATGTGAAGCAACTTCAAGAGCAGGTGCAAGAATTAGAAAAGAAAAACAAGAAGAGGAGCAGAGAGTCAGTGATATTGGTGAAGAAATCGAAGAGCAATAATGAAAAAATATTATTAGAAGAAAGTACAATAATATCAAGTGAAACAAGAAGAAGTAAAGATGGTGGAACAGGGCTCCCTGATATTGAAGCAAGATTTATGGGGAAAGATGTTCTGATTGAGATTCATTGTGAGAAGGAGAATGGCATTGAGATGAAAATACTTAATCAGCTTGAAAATCTTCATCTTTTTGTCACTGGAAGTAGTGTTCTTCCTTTTGGCAATTCTGCTCTGGGGATCACTATTATTGCTAAGATGGGAGATTCGTGTGAAATGACAGTGAATGATGTGGTCAGAAACCTTAGGCAAGTGTTCTTGAAGGCACATCAAAATTCACATGGCATTTAA 1143 0.3701 MDDFSWEHLHLQLEMDDENMNNNNGVDDDNNEDDDEFLREILMLQPSFSSENSESDNLQNTVGSSSSPVIEEVPQDLTAENSNNKNKKNNTMKQPRRSSSSSSLRCSSPRRYILSFDNSTMTPATPNQLQEDPYYANNNNNNHKNKKNKDPSSCDYSSPKRVVPICTNNSENKKEEGAITTKRARSSSQTMDHIMAERKRRQELTERFIALSATIPGLTKTDKASILRAAIDYVKQLQEQVQELEKKNKKRSRESVILVKKSKSNNEKILLEESTIISSETRRSKDGGTGLPDIEARFMGKDVLIEIHCEKENGIEMKILNQLENLHLFVTGSSVLPFGNSALGITIIAKMGDSCEMTVNDVVRNLRQVFLKAHQNSHGI* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0175 380 Gene3D - 186 261 IPR036638 GO:0046983
Amo19g0175 380 SMART finulus 194 243 IPR011598 GO:0046983
Amo19g0175 380 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 5 375 - -
Amo19g0175 380 Pfam Helix-loop-helix DNA-binding domain 192 238 IPR011598 GO:0046983
Amo19g0175 380 Coils Coil 227 254 - -
Amo19g0175 380 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 188 237 IPR011598 GO:0046983
Amo19g0175 380 PANTHER BHLH TRANSCRIPTION FACTOR 5 375 - -
Amo19g0175 380 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 188 254 IPR036638 GO:0046983
Amo19g0175 380 MobiDBLite consensus disorder prediction 48 158 - -
Amo19g0175 380 MobiDBLite consensus disorder prediction 48 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0175 Amo-Chr19 1888882 1894087 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0175 181 367 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 49.741 1.39e-48 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo19g0175 HLH 1.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0175 - - ahf:112779544 584.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0175 19 1888882 1894087 Amo19g0177 19 1912179 1915358 PCT
Amo19g0174 19 1872476 1876089 Amo19g0175 19 1888882 1894087 PCT
Amo19g0178 19 1929688 1933716 Amo19g0175 19 1888882 1894087 PCT
Amo09g0007 09 70674 75073 Amo19g0175 19 1888882 1894087 PCT