Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2545 ATGGCTTCAACCCTTTTGAGAAGGGCACTCTTGAGTGCTCGCTTGATTCACCCTTCCGCCACTTTCCCACCTCAAACGTCACAGATTCTCTCTTCCTTATCTACTGTGCAGAAGCGGCTGCTATTTAACGGAACTGTCAAAACCTATACAGTTCATAACCCAAAAACAACTGGTTGGATTCGTTGTATGGCTTTCTCTGCAGAAGCAAAATCCACAAGATCTGTATCAACAAATGAACCAGTTGTTTCTGTCGATTGGCTTTATGATAACCTTAAGGATCCTTATGTGAAGGTGTTGGATGCATCGTGGTACATGCCGGATGAACAGAGGAACCCAATCCAAGAATATCAGGTTGCTCATATTCCTGGGGCCCTTTTCTTTGATGTTGATGGAATATCAGATCAAACTACAAAATTGCCACACATGTTGCCGTCAGAGGAAGCTTTTGCTGCCGCTGTTTCTGCTCTTGGCATAGAGAACAAAGATGATTTGGTTGTTTATGATGGAAAAGGACTATTTAGTGCTGCTCGTGTTTGGTGGATGTTCCGAGTATTTGGCCACAATAGGATTTGGGTTTTAGATGGTGGCTTGCCAAGATGGCGTGCATCGGGTTACGATGTTGAATCCAGCGCCTCTAGTGATGCTATCCTTAAGGCTAGCGCTGCTAGCGAGGCTATTGAAAAAGTGTATCACGGGCAAGCAGTTGGCCCAATCACTTTCCAAACAAAGTTTCAGCCTCATCTTGTGTGGACACTTGATCAGGTTAAGAGAAATGTTGAAGAAAAGAGTCACCAACACATTGATGCTCGATCACAGGCCAGGTTTGATGGAGCTGCACCAGAACCGAGAAAGGGAATCCGAAGTGGTCATGTACCTGGCAGCAAGTGCATTCCATTTCCCCAGTTGCTAGATGGTTCACAAGCATTGTTACCAGCAGATGAACTTAAGAAGCGATTTGAGCAAGCAGGCATCTCATTGGAAAGCCCTATCATTACTTCTTGTGGAACAGGCGTAACTGCTTGCATTCTTGCATTGGGTCTTCACCGACTCGGAAAAATTGATGTTCCGGTTTACGATGGATCTTGGACAGAATGGGGAGCAAACCCTGATACTCCTGTTGAAACCTCATCTTAA 1134 0.4506 MASTLLRRALLSARLIHPSATFPPQTSQILSSLSTVQKRLLFNGTVKTYTVHNPKTTGWIRCMAFSAEAKSTRSVSTNEPVVSVDWLYDNLKDPYVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDVDGISDQTTKLPHMLPSEEAFAAAVSALGIENKDDLVVYDGKGLFSAARVWWMFRVFGHNRIWVLDGGLPRWRASGYDVESSASSDAILKASAASEAIEKVYHGQAVGPITFQTKFQPHLVWTLDQVKRNVEEKSHQHIDARSQARFDGAAPEPRKGIRSGHVPGSKCIPFPQLLDGSQALLPADELKKRFEQAGISLESPIITSCGTGVTACILALGLHRLGKIDVPVYDGSWTEWGANPDTPVETSS* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2545 377 CDD TST_Repeat_2 251 367 - -
Amo18g2545 377 Gene3D - 245 371 IPR036873 -
Amo18g2545 377 SMART rhod_4 82 206 IPR001763 -
Amo18g2545 377 SMART rhod_4 250 371 IPR001763 -
Amo18g2545 377 ProSiteProfiles Rhodanese domain profile. 260 374 IPR001763 -
Amo18g2545 377 MobiDBLite consensus disorder prediction 263 292 - -
Amo18g2545 377 ProSitePatterns Rhodanese C-terminal signature. 355 365 IPR001307 GO:0004792
Amo18g2545 377 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 79 211 IPR036873 -
Amo18g2545 377 Gene3D - 74 216 IPR036873 -
Amo18g2545 377 ProSiteProfiles Rhodanese domain profile. 96 209 IPR001763 -
Amo18g2545 377 ProSitePatterns Rhodanese signature 1. 116 127 IPR001307 GO:0004792
Amo18g2545 377 PANTHER THIOSULFATE SULFERTANSFERASE 69 376 IPR045078 GO:0016783
Amo18g2545 377 Pfam Rhodanese-like domain 83 202 IPR001763 -
Amo18g2545 377 Pfam Rhodanese-like domain 252 367 IPR001763 -
Amo18g2545 377 PANTHER THIOSULFATE/3-MERCAPTOPYRUVATE SULFURTRANSFERASE 1, MITOCHONDRIAL-LIKE 69 376 - -
Amo18g2545 377 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 245 375 IPR036873 -
Amo18g2545 377 CDD TST_Repeat_1 81 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2545 Amo-Chr18 101971005 101977880 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g2545 18 101971005 101977880 Amo18g2545 18 101971005 101977880 ECH
Amo18g2545 18 101971005 101977880 Amo07g2047 07 63094810 63100968 hybridization