Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2370 ATGGGGGTCAATGAAGATTTGATGATGAAGGATGATTCATATGCATCATCAGTAATGGAGGAAGAGGATGATGTTCCACTTCCAGGGTTTAGATTCCACCCAACAGATGAAGAACTTGTGAGTTTCTATCTAAAGAGGAAGCTTGACAAGAAACCAATCAGCATCGAACTCATCAAACAGATTGATATCTACAAGTATGATCCTTGGGATCTTCCAAAAGCGAGTGGAAGTGGAGGAGAGAAGGAAGGTTACTTCTTTTGCAAGAGAGGGAGGAAGTATAGGAACAGCATAAGGCCTAACAGAGTCACCAGTTCCGGCTTCTGGAAAGCAACCGGGATAGACAAGCCGGTYTACTCCCATGGKGGCGAAGGAAWCGACTGCATTGGACTCAAGAAGACGCTTGTCTACTACCGCGGCAGCGCCGGTAAAGGTACCAAGACTGATTGGATGATGCACGAGTTTCGCCTCCCTTCTGCCACAACCGAAAACAACACAAGCCTACTTGCCAACAACAAGAATAATAATAATATCAACAATGCCGATGTTGCCCAAGAAGCTGAAATCTGGACATTGTGTAGAATATTCAAGCGAAATGTGTCACAAAGGAAGCACACAGTAGACTTGAGATCACATTTAGTAACAGCTAATAGTAACAAGCACAAAACCACTAGAACCCATGTTGTTCAATCCAATAATAACAATATTAATCAACATCAAGAATCTTACATCAACTTTGGTGCAACAATCATTGGCCATCACCATTACCATCATCATCGTCATCAAAATGAACAGAAGCCAGTGACTAACTACACAGCATGCAATAACAACACTGATCAAATCCAAAGGAACAATAGCAATCATCATCATCATCATCAGTTGAACTATCACCCTTCTTCAGCGGTGGCTACTACTGTGCCACAGCAACAACAACAACAATATCATCATCATCATCAGCTAATGACGGCTCCAGCTTCTAACATGTGGATTAATCCTTCTGCGATGAACGATTTGTTTGCATTTGATGATGACTGGGATGAGCTTGGATCTGTTCTCAAATTCACTGTTGATACCCCTAGCTTGTAA 1083 0.4211 MGVNEDLMMKDDSYASSVMEEEDDVPLPGFRFHPTDEELVSFYLKRKLDKKPISIELIKQIDIYKYDPWDLPKASGSGGEKEGYFFCKRGRKYRNSIRPNRVTSSGFWKATGIDKPVYSHGGEGXDCIGLKKTLVYYRGSAGKGTKTDWMMHEFRLPSATTENNTSLLANNKNNNNINNADVAQEAEIWTLCRIFKRNVSQRKHTVDLRSHLVTANSNKHKTTRTHVVQSNNNNINQHQESYINFGATIIGHHHYHHHRHQNEQKPVTNYTACNNNTDQIQRNNSNHHHHHQLNYHPSSAVATTVPQQQQQQYHHHHQLMTAPASNMWINPSAMNDLFAFDDDWDELGSVLKFTVDTPSL* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2370 360 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 320 - -
Amo18g2370 360 ProSiteProfiles NAC domain profile. 26 197 IPR003441 GO:0003677|GO:0006355
Amo18g2370 360 MobiDBLite consensus disorder prediction 268 293 - -
Amo18g2370 360 MobiDBLite consensus disorder prediction 268 282 - -
Amo18g2370 360 Gene3D NAC domain 35 201 IPR036093 GO:0003677|GO:0006355
Amo18g2370 360 PANTHER CONTAINING PROTEIN 9, PUTATIVE, EXPRESSED-RELATED 16 320 - -
Amo18g2370 360 SUPERFAMILY NAC domain 26 197 IPR036093 GO:0003677|GO:0006355
Amo18g2370 360 Pfam No apical meristem (NAM) protein 28 156 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2370 Amo-Chr18 78147610 78150197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g2370 7 197 NAC Transcription Factor Family AT5G39820 58.247 1.18e-75 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo18g2370 NAM 4.4e-34 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g2370 18 78147610 78150197 Amo18g2370 18 78147610 78150197 ECH