Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2232 ATGAGCAACATAAGCTTGGTAGAGGCAAGGCTTCCACCAGGGTTCAGATTTCATCCAAAAGATGAAGAGCTTGTGTGTGATTACTTGATGAAGAAGTTCACGCACAATGAATCCCTTCTCATGATTGATGTCGACCTCAACAAGTGTGAGCCATGGGATATTCCTGAAACAGCATGTGTGGGAGGGAAGGAGTGGTACTTCTACACACAGAGAGACAGAAAGTATGCAACGGGTCTGCGTACAAACAGAGCAACGGCATCAGGATATTGGAAGGCCACTGGCAAGGACAGGCCTATCCTTAGGAAGGGCAGCCTTGTTGGTATGCGAAAGACTCTTGTCTTCTATCAAGGTCGGGCTCCCAAAGGCCGTAAGACTGAGTGGGTCATGCATGAGTTTCGCGTTGAACCTCCTCTTCCTCCCCCCAACACTACTTCTTCTAAGGAAGATTGGGTGTTGTGTAGGGTGTTCTACAAGAACAGAGAAGTTAGTGGCAAACCTAATAGCATGGGAAGCTGCTATGATGACACAGGCTCTTCATCTCTTCCAGCATTAATGGATTCTTACATCAGCTTTGACCAACAACAACAACCTCAAACCCATCTTCATGCTGATGAGTATGAGCAAGTGCCCTGCTTCTCCATTTTCTCTCACGCCCAAACAAGCCCTATTTTCAACCACATAATGGAGCCTAAGTTATTCCCTACCAACAACAACAATAATAATGCAACTTTATATGGTGGAGGAGGAACTACTACAACACCCAATTTGGGTTCTTGCTTAGACCCTTTTTCATGTGATAGGAAAGTATTGAAAGCTGTTTTGAGTCAGCTCACAAATATGGAAAGAAACATACCTAATAATAATAACAACAATACAAATAGTATAAAAGGGTCACCAAGTTTAGGAGAAGGTAGTTCTGAGAGTTACTTATCTGAGGTTGGCATGCCCAACTTGTGGAACAATTATTGA 969 0.4365 MSNISLVEARLPPGFRFHPKDEELVCDYLMKKFTHNESLLMIDVDLNKCEPWDIPETACVGGKEWYFYTQRDRKYATGLRTNRATASGYWKATGKDRPILRKGSLVGMRKTLVFYQGRAPKGRKTEWVMHEFRVEPPLPPPNTTSSKEDWVLCRVFYKNREVSGKPNSMGSCYDDTGSSSLPALMDSYISFDQQQQPQTHLHADEYEQVPCFSIFSHAQTSPIFNHIMEPKLFPTNNNNNNATLYGGGGTTTTPNLGSCLDPFSCDRKVLKAVLSQLTNMERNIPNNNNNNTNSIKGSPSLGEGSSESYLSEVGMPNLWNNY* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2232 322 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 225 - -
Amo18g2232 322 PANTHER NAC (NO APICAL MERISTEM) DOMAIN TRANSCRIPTIONAL REGULATOR SUPERFAMILY PROTEIN 3 225 - -
Amo18g2232 322 SUPERFAMILY NAC domain 2 159 IPR036093 GO:0003677|GO:0006355
Amo18g2232 322 MobiDBLite consensus disorder prediction 281 309 - -
Amo18g2232 322 ProSiteProfiles NAC domain profile. 11 158 IPR003441 GO:0003677|GO:0006355
Amo18g2232 322 Gene3D NAC domain 20 163 IPR036093 GO:0003677|GO:0006355
Amo18g2232 322 Pfam No apical meristem (NAM) protein 12 134 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2232 Amo-Chr18 69026852 69033091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g2232 2 320 NAC Transcription Factor Family AT1G56010 59.036 6.72e-126 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo18g2232 NAM 5.2e-36 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g2232 18 69026852 69033091 Amo18g2232 18 69026852 69033091 ECH
Amo18g2232 18 69026852 69033091 Amo07g2087 07 64017833 64024100 hybridization