Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2211 ATGCTTATACTAGTTGGGAACGTGCAAGGAACAATYGGTTCTGTGGCTACCCCATTGAGTTTTGGAAGCTTAARGGGTGTGAGTTCCAATGGAGGAAGGTCCCGTTCTGTTGTGAGGAGGGTGTCCCTTTCAAGAGGTAACTCTATTAAGGATAAGAGGAGATGGCATTGTATATCACTGTCTGTGTGTAGATATTCTGTTACCACAACCGATTTTGTCGCTGACCAGGGAAATTCAGTGTCCCTTGATTCTAARAGTAGTAGAGGYAGCCAAGGTGGTGATGATGGTAGTGGTGGTTTTGTGCTTAAGCCTCCTCCTAAGCCTGTTTTGAAGTCCCAGGAGAATAAGGATAGTCCCCTTTTGGGCTCGAATTCYGAGTCCTGGGGGAATTCGCGGAATGGCYAGTCCCTAGATGATGATGTACAGGAGAGGAATAAAGTGATTGAGTCACTTGGTGAGGTGTTGGAGAAAGCTGAAAAGTTGGAAAGCCCCAAGTTGGATGATAAAAGGAATAATGGCTCAATAAATAAACCCACAGCGCCCAATACAAATGGTAATTCTAAGGTCAGTACACCGGTAAATTCAGCTAAAACCCAGAAGGCTAAAACCTTGAAGAGTGTATGGCGTAAGGGWGATTCGYTRGCAAATGTACAGAAGGTTGTTAAGGAGGTACCTAAGCCTAATAACAAGAGTGTGGTAGGGGAAAAATCTGAAATAGGGGCAGAAGYGAAGATAACATCCGAGTCTCGTGCTCCCCAGCCCTCATCAAAATCTCAGCCAATGTTACAAGCAAAACCTTCTGTAGCTCCACCACCCATAAAAAAGCCTGTGGTGTTGAAGGATAAGGGGGCAGCTAATGCATCTGTTAAATCTAAAGAAAGGAAGCCTGGGCCGATCTTAATTGACAAGTTTGCTTCCAAGAAACCCGTTGTCGATCCTGTAATTGCTCAAGCAGTCCTAGCCCCTCCAAAACCAGGGAAGGGCCCTCCATCAGGAAAGTTTAAAGATGACTACAGGAAGAGAGGTGCTCCAGCTGGAGGAGCAAGAAGGCGTCTACTAAATGATGATGATGATGTGATTCCCGATGAGGACACATCGGAACTCAATGTRTCTATTCCTGGTGCTGCAAGAAAAGGAAGAAAATGGAGTAAAGCGAGTCGAAAGGCAGCAAGGCTACAGGCTGCCAAGGATGCGGCTCCTGTCAAAGTCGAAATTCTAGAGGTCAGTGACAAAGGTATGCTGGTGGAGGAGTTAGCCTTCAACTTGGCGATCAGTGAAGGAGAAATCCTTGGATCTTTGTATGCCAAGGGGATCAAACCAGACGGCGTGCAAACTCTCGACAAAGATATGGTGAAGATGATATGTAAAGAGTATGATGTGGAAGTTATAGATGCTGATCCAGTCAAAGTTGAATCGTTAGCAAAGAAAAGGGAAATTCTTGATGAAGATGATCTTGACAAACTCAAAGATAGACCTCCTGTCATCACTATTATGGGCCACGTAGATCACGGCAAGACAACTCTTTTGGATTATATACGGAAGAGCAAGGTAGCTGCTTCTGAAGCRGGTGGGATCACCCAGGGGATCGGGGCTTATAAAGTAGAAGTACCTGTTGACGGAAAACCTTTGCCCTGTGTTTTCCTTGATACTCCTGGGCATGAGGCGTTTGGGGCAATGAGAGCTCGTGGGGCAAGTGTGACAGACATTGCTATCATTGTTGTGGCTGCTGATGATGGCATTCGGCCTCAAACAAATGAAGCTATAGCTCATGCCAAAGCAGCGGGAGTACCCATAATCATTGCCATAAACAAGATAGATAAGGACGGAGCAAATCCTGAGCGAGTCATGCAAGAGCTTTCTTCTATTGGTTTAATGCCAGAAGATTGGGGTGGTGACACCCCAATGGTTCAGATAAGTGCTCTTAAAGGGCAGAATATAGATGATCTTTTGGAAACTGTTATGCTTGTGGCTGAGTTGCAAGAGTTGAAAGGAAATCCTGATAGAAGCGCAAAGGGAACAGTCATAGAGGCYGGTCTTGATAAATCAAAAGGACCTTTTGCTACCTTTATTGTGCAAAATGGTACCCTCAGAAGGGGAGATATAGTAGTTTGCGGAGAAGCMTTTGGAAAGGTGCGAGCTTTGTTTGATGATGCTGGAAAGCGTGTTGATTTAGCTACACCCTCTATTCCCGTACAGGTTATTGGATTGAATAATGTTCCGATTGCCGGTGATGAATTTGAGGTTGTTGAATCCCTTGATACTGCACGTGAAAGAGCAGAATCCCGTGCTGAGTTGTTGCGAAATGAGCGTATTTCTGCAAAGGCAGGGGATGGCAAGATTACCCTTTCTTCCTTAGCTTCTGCAGTTTCGTCAGGAAAGCTTTCTGGACTCGACTTGCATCAACTAAATATTATCTTGAAGGTTGATCTTCAGGGATCCATTGAAGCTGTCAGACAAGCCCTGCAGGTGCTACCACAAGATAACGTTACATTGAAGTTTTTGTTGGAAGCAACAGGCGATGTAACCACAAGTGACATTGATCTTGCAGTTGCAAGCAAAGCAATTATTTTTGGATTTAATGTCAAAGCACCAGGTTCGGTGAAAAGCTATGCAGATAATAAAGCTGTTGAGATTAGATTATACAGAGTCATTTACGACTTAATCGATGATGTCAGAAATGCAATGGAGGGACTCTTAGAGCCTGTTGAGGAGCAAATAAAAATTGGCTTAGCAGAAGTGCGAGCCACATTCAGCAGTGGTAGTGGTCGTGTTGCGGGATGCATGGTTAATGAGGGAAAGGTGGAGAAAGGATGCGGTATTCGAGTCATTCGGAAGGGGAAAGAAGTTCACGTTGGTACTGTTGATTCTTTGAGACGGGTAAAGGAGATAGTTAAAGAGGTAAATGCTGGTCTTGAGTGTGGAATCGGGTTAGAGGACTTTGATGACTGGGTAGAGGGTGATATCCTTGAAGCCTTCAACTCAGTTCAGAAGAGGCGGACTCTTGAAGAGGCCTCAGAATCCATGGCTGCTGCCGTGGAGGGGGTAGGGGTTTAA 3054 0.4489 MLILVGNVQGTIGSVATPLSFGSLXGVSSNGGRSRSVVRRVSLSRGNSIKDKRRWHCISLSVCRYSVTTTDFVADQGNSVSLDSKSSRGSQGGDDGSGGFVLKPPPKPVLKSQENKDSPLLGSNSESWGNSRNGXSLDDDVQERNKVIESLGEVLEKAEKLESPKLDDKRNNGSINKPTAPNTNGNSKVSTPVNSAKTQKAKTLKSVWRKGDSLANVQKVVKEVPKPNNKSVVGEKSEIGAEXKITSESRAPQPSSKSQPMLQAKPSVAPPPIKKPVVLKDKGAANASVKSKERKPGPILIDKFASKKPVVDPVIAQAVLAPPKPGKGPPSGKFKDDYRKRGAPAGGARRRLLNDDDDVIPDEDTSELNVSIPGAARKGRKWSKASRKAARLQAAKDAAPVKVEILEVSDKGMLVEELAFNLAISEGEILGSLYAKGIKPDGVQTLDKDMVKMICKEYDVEVIDADPVKVESLAKKREILDEDDLDKLKDRPPVITIMGHVDHGKTTLLDYIRKSKVAASEAGGITQGIGAYKVEVPVDGKPLPCVFLDTPGHEAFGAMRARGASVTDIAIIVVAADDGIRPQTNEAIAHAKAAGVPIIIAINKIDKDGANPERVMQELSSIGLMPEDWGGDTPMVQISALKGQNIDDLLETVMLVAELQELKGNPDRSAKGTVIEAGLDKSKGPFATFIVQNGTLRRGDIVVCGEAFGKVRALFDDAGKRVDLATPSIPVQVIGLNNVPIAGDEFEVVESLDTARERAESRAELLRNERISAKAGDGKITLSSLASAVSSGKLSGLDLHQLNIILKVDLQGSIEAVRQALQVLPQDNVTLKFLLEATGDVTTSDIDLAVASKAIIFGFNVKAPGSVKSYADNKAVEIRLYRVIYDLIDDVRNAMEGLLEPVEEQIKIGLAEVRATFSSGSGRVAGCMVNEGKVEKGCGIRVIRKGKEVHVGTVDSLRRVKEIVKEVNAGLECGIGLEDFDDWVEGDILEAFNSVQKRRTLEEASESMAAAVEGVGV* 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2211 1017 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 490 663 IPR000795 GO:0003924|GO:0005525
Amo18g2211 1017 PANTHER TRANSLATION INITIATION FACTOR IF-2, CHLOROPLASTIC 39 1009 - -
Amo18g2211 1017 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 39 1009 IPR015760 -
Amo18g2211 1017 Hamap Translation initiation factor IF-2 [infB]. 7 999 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Amo18g2211 1017 TIGRFAM IF-2: translation initiation factor IF-2 411 1001 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Amo18g2211 1017 MobiDBLite consensus disorder prediction 173 202 - -
Amo18g2211 1017 TIGRFAM small_GTP: small GTP-binding protein domain 492 653 IPR005225 GO:0005525
Amo18g2211 1017 SUPERFAMILY Translation proteins 905 999 IPR009000 -
Amo18g2211 1017 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 484 663 IPR027417 -
Amo18g2211 1017 MobiDBLite consensus disorder prediction 159 365 - -
Amo18g2211 1017 Gene3D - 798 903 IPR036925 -
Amo18g2211 1017 Gene3D - 487 665 IPR027417 -
Amo18g2211 1017 CDD mtIF2_IVc 909 991 - -
Amo18g2211 1017 MobiDBLite consensus disorder prediction 77 144 - -
Amo18g2211 1017 MobiDBLite consensus disorder prediction 116 136 - -
Amo18g2211 1017 Gene3D Translation factors 666 781 - -
Amo18g2211 1017 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 797 909 IPR036925 -
Amo18g2211 1017 Pfam Translation-initiation factor 2 798 891 IPR023115 -
Amo18g2211 1017 SUPERFAMILY Translation proteins 666 750 IPR009000 -
Amo18g2211 1017 Pfam Elongation factor Tu GTP binding domain 495 655 IPR000795 GO:0003924|GO:0005525
Amo18g2211 1017 Coils Coil 749 769 - -
Amo18g2211 1017 CDD IF2_eIF5B 493 659 - -
Amo18g2211 1017 PRINTS GTP-binding elongation factor signature 598 607 IPR000795 GO:0003924|GO:0005525
Amo18g2211 1017 PRINTS GTP-binding elongation factor signature 494 507 IPR000795 GO:0003924|GO:0005525
Amo18g2211 1017 PRINTS GTP-binding elongation factor signature 546 556 IPR000795 GO:0003924|GO:0005525
Amo18g2211 1017 PRINTS GTP-binding elongation factor signature 562 573 IPR000795 GO:0003924|GO:0005525
Amo18g2211 1017 Gene3D Translation factors 904 1000 - -
Amo18g2211 1017 MobiDBLite consensus disorder prediction 248 263 - -
Amo18g2211 1017 CDD IF2_mtIF2_II 670 764 IPR044145 -
Amo18g2211 1017 ProSitePatterns Initiation factor 2 signature. 952 974 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Amo18g2211 1017 MobiDBLite consensus disorder prediction 77 93 - -
Amo18g2211 1017 MobiDBLite consensus disorder prediction 330 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2211 Amo-Chr18 67595424 67621227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g2211 491 889 Eukaryotic Initiation Factors Gene Family AT1G76810 29.462 3.55e-27 117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g2211 18 67595424 67621227 Amo18g2211 18 67595424 67621227 ECH
Amo18g2211 18 67595424 67621227 Amo07g2094 07 64236508 64245233 hybridization