Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1034 ATGGGAATGAAGAGCACTGGGGGAGAGATTGTTCAAGTCCAAGGTGGKCACATTGTTCGATCCACCGGCCGGAAAGATCGACACAGCAAGGTTTACACGGCGAAAGGGCCGCGTGACCGTCGAGTTAGGCTCTCGGCACACACTGCAATCCAATTCTATGATGTCCAAGACAGGCTTGGTTATGACAGGCCAAGCAAGGCAGTGGACTGGCTTATCAAGAAGGCCAAAGCAGCCATCGACAAACTCGCCGAGCTCCCTCCTTGGGAGCCTACACCTCCTCCTCCCACTACCAATGAGGTGGAGGAGGATCAGAATGGAGGATCAACTGACATGGCAATTGCAGAACAATCAGAGTCTTCTGGTTACAATTTTCAGCTTCAAAGGCAACTTGGTGAAGACCCTGAAAACCAACACCACCACTCAGCATTCATTCCTTCACCTATTGACACTGATGGTGGCATAGCATTTTTCCCAACAACGTCTGCTGCTTCCTCCATCAATTTCCAGAGCTACCCTCCTGAGATAATCTCAAGGACCAACAACTCCTCAGAGGATCTTGGACTTTCCCTTCATTCTTTCCAAGATTCTGGCCTAATTCATCATCATGGACAGTCACAACAAGGAGGTGGTGCAGATCATCAAAACCCTTCTTCAAATGACCAAACTCTCTTTGCTAACTACCAGAGAATGGTGGCCTGGAACAGTGATGCCGGAGGCACGCAAGCCGACATGAACCGTTCCGGTTTCATGGTGAATTCACCTGGTTTTTCTTCTGCTTTTTCTCATCATCAACAAAGGGGTACCCTTCAGTCCAGTTTCTCACCATCACTTCGCCCTTGGAGTGAGATTCCTCAAATGGCTTCTTCTAACGAGCATCACCACAACCACAAGTCTCAGCCAATCCAGCAGCAACACCAAGCTTCAATCTTTGGAAGCAGGTTCCTCTCTGATGCATTGCCAGGGTTCTGCATTCCTGCTAGGATTCAAGGTGAAGATGAGAGCCATGGTGTTGGCTCTGACAGGCCTTCATCTTCTGCTTCTCCTAATTCACATCACTGA 1059 0.4901 MGMKSTGGEIVQVQGGHIVRSTGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDKLAELPPWEPTPPPPTTNEVEEDQNGGSTDMAIAEQSESSGYNFQLQRQLGEDPENQHHHSAFIPSPIDTDGGIAFFPTTSAASSINFQSYPPEIISRTNNSSEDLGLSLHSFQDSGLIHHHGQSQQGGGADHQNPSSNDQTLFANYQRMVAWNSDAGGTQADMNRSGFMVNSPGFSSAFSHHQQRGTLQSSFSPSLRPWSEIPQMASSNEHHHNHKSQPIQQQHQASIFGSRFLSDALPGFCIPARIQGEDESHGVGSDRPSSSASPNSHH* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1034 352 MobiDBLite consensus disorder prediction 199 220 - -
Amo18g1034 352 MobiDBLite consensus disorder prediction 1 30 - -
Amo18g1034 352 Pfam TCP family transcription factor 23 124 IPR017887 -
Amo18g1034 352 MobiDBLite consensus disorder prediction 327 352 - -
Amo18g1034 352 MobiDBLite consensus disorder prediction 260 281 - -
Amo18g1034 352 MobiDBLite consensus disorder prediction 85 106 - -
Amo18g1034 352 ProSiteProfiles TCP domain profile. 24 82 IPR017887 -
Amo18g1034 352 PANTHER TRANSCRIPTION FACTOR TCP4 2 352 - -
Amo18g1034 352 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 2 352 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1034 Amo-Chr18 16900277 16903150 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1034 8 351 TCP Transcription Factor Family AT3G15030 42.432 3.97e-67 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Amo18g1034 TCP 3.5e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1034 18 16900277 16903150 Amo13g2302 13 39589163 39591215 ECH
Amo18g1034 18 16900277 16903150 Amo18g1034 18 16900277 16903150 ECH
Amo18g1034 18 16900277 16903150 Amo08g1311 08 21318711 21321629 hybridization
Amo13g2302 13 39589163 39591215 Amo18g1034 18 16900277 16903150 PCT
Amo03g0175 03 3356303 3359726 Amo18g1034 18 16900277 16903150 PCT