Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0438 ATGGATCCTTCTAGTGGACAACACCATCAGGAAATGTCATCAAACCAGGGACTGGAGAACATGATAGGATGCTCCACAAAGAGTCAGCAACAAGAGAGAAAGCCAAGGCCACAACCAGAACAAGCACTCAAATGTCCAAGATGTGACTCTACCAACACCAAATTCTGCTACTACAACAACTACAGCCTCTCTCAGCCAAGGTACTTCTGCAAATCTTGCAGAAGATACTGGACCAAAGGTGGAACACTCAGGAATGTTCCTGTTGGTGGTGGATGCAGGAAGAACAAGAGATCTTCTAATTCTTCTTCTTCATCAACTACTTCCTCTTCATCTAATTCACCTGCACCCTCTTCAAGGAGGCCTCAAGATCATCATCATGGATTCATCTCACCTAATAATCCTCTCATCACTGCTTTCCCTCATTTGGCTTATGATCATCATCCTTCTTCTTCTCCTACCAGTGATCTCACCTTAGCCCTTGCAAGGCTCCAGAAACAATCAATGCCTTTTGATGATCATGATCTCTCAATCTTGGGCAACCCCACAAGCTCCCTTTGTGATATTCTTGGAAATCAAGCCCTTAACACCCACAACACTTCATCAACTGGCTTCTTGGAAGCACTTAGAACCGGATTCCAAGGAAACAATAGTAATAACAATACTCTTCATCATCAGAATCTGTACTATTCATATGGGAATGGGGACATGGGTGAGGTTGTGGACAATGGTGCTGTTAATGGTGGAGACATGTTGCTACCTAATAACTATGATTCAGAGATGAGCAATGCAGCAACTCAAGCAGTGAGTGTCAGCACCATGAAACAAGAACTATGCAGTGAAGCTACTAAGGTTCTTGGTGGTGGCGGTTTTCCATGGCATAATAGTAGTAATGGGGACACAAACATGGGTGAATTTGATTCAGCAAGAGCTACTTGGAATGCTGGTTTCACATCTTCAAATTGGCATGGCCTTCTCCATAGTCCTCTAATGTAA 993 0.435 MDPSSGQHHQEMSSNQGLENMIGCSTKSQQQERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSNSSSSSTTSSSSNSPAPSSRRPQDHHHGFISPNNPLITAFPHLAYDHHPSSSPTSDLTLALARLQKQSMPFDDHDLSILGNPTSSLCDILGNQALNTHNTSSTGFLEALRTGFQGNNSNNNTLHHQNLYYSYGNGDMGEVVDNGAVNGGDMLLPNNYDSEMSNAATQAVSVSTMKQELCSEATKVLGGGGFPWHNSSNGDTNMGEFDSARATWNAGFTSSNWHGLLHSPLM* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0438 330 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677|GO:0006355
Amo18g0438 330 Pfam Dof domain, zinc finger 41 97 IPR003851 GO:0003677|GO:0006355
Amo18g0438 330 PANTHER DOF ZINC FINGER PROTEIN DOF3.2-LIKE 8 329 - -
Amo18g0438 330 MobiDBLite consensus disorder prediction 1 32 - -
Amo18g0438 330 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677|GO:0006355
Amo18g0438 330 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 8 329 IPR045174 GO:0003700|GO:0006355
Amo18g0438 330 MobiDBLite consensus disorder prediction 1 44 - -
Amo18g0438 330 MobiDBLite consensus disorder prediction 87 131 - -
Amo18g0438 330 MobiDBLite consensus disorder prediction 94 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0438 Amo-Chr18 5806442 5808019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0438 1 330 C2C2-Dof Transcription Factor Family AT2G28510 36.648 2.41e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Amo18g0438 zf-Dof 7.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0438 - - aip:107612899 644.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0438 18 5806442 5808019 Amo18g0438 18 5806442 5808019 ECH
Amo18g0438 18 5806442 5808019 Amo08g1078 08 18182042 18183672 hybridization
Amo18g0438 18 5806442 5808019 Amo13g0345 13 4667736 4669093 PCT
Amo13g0345 13 4667736 4669093 Amo18g0438 18 5806442 5808019 PCT