Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0257 ATGCAAGACCCAACAATATTTCAACCCATCAAACCCCAATTTCCTGAACAAGAACAACTTAAATGCCCACGTTGCGACTCAACAAACACCAAATTCTGCTACTACAACAACTACAATCTCTCACAGCCACGCCATTTTTGTAAGAATTGCAGAAGGTATTGGACCAAAGGAGGTGCTCTTAGGAACATCCCAGTTGGTGGTGGAAGCAGGAAGAACACAAAAAAATCATCCACCAACAACAACTCCTCCAAACGCCCTACATCATCATCTGCACCATCATCATCATCAGTATCCCCTTCACCATCCGTTTCCACTCCAGCACAGGCTGCTTCATCCGCTCCTGAATCCGACTCGGCCCAGGCCTACGCCGCCCAGCCTACTGTGGCTGATCAAGGCCCAGGCTTAAGCTTCAGTTCCCTATTGGCAACTAGCCATCTGGGGAGCCTATTGGAGGGTCTGAATTCAAATGGATCAAGTCTTAAAATGGTGCAAATGAATGAATTCGGAGTGAATGTGAATTCGACCGGTTCTGTTGAGCCGCCAGTGAGCTCGAATTCTAGTAGAAATCCAGGGTTGGATGTTCAGAGCAATGGCAATAATGCAGAGAGCTTTCTGAGTATGCATAATGGTGATTCAAGCTGTTGGAATAATGGTAGCAATGGATGGTCTAATCTTGCAATATTTACACCAGGATCAAGCTTTCAGTAG 708 0.4605 MQDPTIFQPIKPQFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKNTKKSSTNNNSSKRPTSSSAPSSSSVSPSPSVSTPAQAASSAPESDSAQAYAAQPTVADQGPGLSFSSLLATSHLGSLLEGLNSNGSSLKMVQMNEFGVNVNSTGSVEPPVSSNSSRNPGLDVQSNGNNAESFLSMHNGDSSCWNNGSNGWSNLAIFTPGSSFQ* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0257 235 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677|GO:0006355
Amo18g0257 235 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677|GO:0006355
Amo18g0257 235 MobiDBLite consensus disorder prediction 69 126 - -
Amo18g0257 235 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677|GO:0006355
Amo18g0257 235 PANTHER DOF ZINC FINGER PROTEIN DOF3.1-LIKE 2 235 - -
Amo18g0257 235 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 2 235 IPR045174 GO:0003700|GO:0006355
Amo18g0257 235 MobiDBLite consensus disorder prediction 61 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0257 Amo-Chr18 3623929 3626387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0257 11 150 C2C2-Dof Transcription Factor Family AT1G51700 55.634 3.10e-43 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Amo18g0257 zf-Dof 2.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0257 - - adu:107458974 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0257 18 3623929 3626387 Amo18g0257 18 3623929 3626387 ECH
Amo18g0257 18 3623929 3626387 Amo09g0244 09 2795840 2797827 hybridization
Amo18g0257 18 3623929 3626387 Amo09g0244 09 2795840 2797827 PCT
Amo09g0244 09 2795840 2797827 Amo18g0257 18 3623929 3626387 PCT