Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2944 ATGGAGGAATACACTAATAATAGCAATAATAATCAAAGCCCAAGTTCAAGTTCAAGGGCAAGTTTCTTGTACTCTTCCTTTGGTGTTGGTGGTGCTACTTCTTCAAGCGTACCCCATCACCTTCCAATTAACACCTTTCATCATCATCATCATCATCATCATCATCAATCTGAAGCTGCTGCTGGATCCGATCACTGCTTTCAATCCGATCAAGTACCTTCCGTCAAAACCGAACCCAGAAACTCCTCGCAGCAGCTCCACAACACTCATCAGATTTTCAACTATCCTCTCATGAGACCCAATGATCTTCACCATTCGAGCGACCAAGGAGGAACCCAAAACTCCAACGATGATGTTGAAGCCATCAAAGCCAAAATCATCGCTCATCCTCACTACTCTAATCTCTTACAAGCGTACATGGATTGCCAAAAGGTAGGAGCTCCGCCGGAAGTGGTGGCGCGTTTAAGCGCGGCTCGGCAGGAATTCGAGGCACGGCAGCGGTCTATGGTTGGTTCCACCAGGGAAGCTTGCGGCAAGGACCCTGAACTTGACCAATTCATGGAGGCATACTATGATATGCTTGTGAAGTACCGAGAGGAACTTTCAAGGCCTATACAAGAGGCTATGGACTTCATGCGCAGGATTGAGACTCAGCTTAATATGCTTTCCAATGGACCCCTTCGCATCTTCTCTGATGATAAATGTGAAGGAGTGGGTTCATCGGAAGAGGATCAACAAGAAAACAGTGGCGGGGARGAAGAATCAGAAGTAGYGCCGGAGATTGATCCTCGGGCAGAAGACCGTGAACTGAAGAACCACTTGCTTAGAAAGTACAGCGGCTACTTAAGCAGCCTGAAGCAAGAACTGTCAAAGAAGAAGAAGAAAGGAAAACTCCCTAAAGATGCCAGGCAAAAGCTACTTACCTGGTGGGAGCTACATTACAAATGGCCTTATCCTTCGGAATCAGAGAAGGTAGCATTGGCAGAATCAACAGGACTGGATCAGAAGCAAATAAACAACTGGTTCATAAATCAAAGGAAGAGACACTGGAAACCATCTGAAGACATGCAATTCATGGTCATGGATGGACTCCATGCGCATAATAATCATCAGAACGCATCTCCTCTCTACATGGATTCCCATTATGTTATGCCTGATGGACATTACCGCTTACCACCATAA 1182 0.4585 MEEYTNNSNNNQSPSSSSRASFLYSSFGVGGATSSSVPHHLPINTFHHHHHHHHHQSEAAAGSDHCFQSDQVPSVKTEPRNSSQQLHNTHQIFNYPLMRPNDLHHSSDQGGTQNSNDDVEAIKAKIIAHPHYSNLLQAYMDCQKVGAPPEVVARLSAARQEFEARQRSMVGSTREACGKDPELDQFMEAYYDMLVKYREELSRPIQEAMDFMRRIETQLNMLSNGPLRIFSDDKCEGVGSSEEDQQENSGGEEESEVXPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLTWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHAHNNHQNASPLYMDSHYVMPDGHYRLPP* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2944 393 Gene3D - 294 356 - -
Amo17g2944 393 SMART KNOX1_2 120 164 IPR005540 GO:0003677|GO:0005634
Amo17g2944 393 SMART KNOX2_2 173 224 IPR005541 GO:0003677|GO:0005634
Amo17g2944 393 Pfam KNOX2 domain 178 222 IPR005541 GO:0003677|GO:0005634
Amo17g2944 393 Pfam ELK domain 269 290 IPR005539 GO:0003677
Amo17g2944 393 Pfam KNOX1 domain 121 163 IPR005540 GO:0003677|GO:0005634
Amo17g2944 393 SUPERFAMILY Homeodomain-like 290 364 IPR009057 -
Amo17g2944 393 ProSitePatterns 'Homeobox' domain signature. 327 350 IPR017970 GO:0000981|GO:0006355
Amo17g2944 393 ProSiteProfiles 'Homeobox' domain profile. 289 352 IPR001356 GO:0003677
Amo17g2944 393 SMART HOX_1 291 356 IPR001356 GO:0003677
Amo17g2944 393 MobiDBLite consensus disorder prediction 1 41 - -
Amo17g2944 393 MobiDBLite consensus disorder prediction 62 95 - -
Amo17g2944 393 CDD homeodomain 301 353 IPR001356 GO:0003677
Amo17g2944 393 Pfam Homeobox KN domain 309 348 IPR008422 GO:0003677|GO:0006355
Amo17g2944 393 ProSiteProfiles ELK domain profile. 269 289 IPR005539 GO:0003677
Amo17g2944 393 MobiDBLite consensus disorder prediction 231 269 - -
Amo17g2944 393 MobiDBLite consensus disorder prediction 1 117 - -
Amo17g2944 393 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 384 - -
Amo17g2944 393 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 1 384 - -
Amo17g2944 393 SMART ELK_2 269 290 IPR005539 GO:0003677
Amo17g2944 393 SMART ELK_2 182 202 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2944 Amo-Chr17 131718234 131722294 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Amo17g2944 KNOX2 1e-24 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2944 17 131718234 131722294 Amo17g2944 17 131718234 131722294 ECH
Amo16g3992 16 151936215 151943869 Amo17g2944 17 131718234 131722294 ECH