Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2875 ATGGGAAAACGTAATTCTCAACGGAAAAGTGCTGCAATGTTCGATACCGATGATGATAGTAGCGTGACTTCGTCATCAACTTCGCGTTCTGATATGATGTCGGTGTATGGGGGTGAAGATGTGCAATTTTATCAAGATTCTGTTCTCGACCAAGCTCTGGATGCCTTAGATGAGAAAAGGGGTTCCACAAGGGAGAATGCTTTGTCATCGATCATTGATGCATTCAATAGCAATATTCAGCATGACTTTGTGGAGAAGAAATTTGCTACCTTACTACACCATTGTCTTGCTTCATTAAAAAAAGGATCTAAAAAAGCATCTGCTAAGGAGATATCTTTGGCATCGCACGCCATTGGTTGTTTGGCCTTGACTGTTGGATGCGGCAATAATGCACGTGAAATATTTGAAGAATCAGTTCGTCCTCTAGATGAATCTCTTGCGTCCAAGTCAGATGTTTCAAAGATACCCTCGTTGCTTGAATGCTTGGCTATAATAACCTTTGTTGGAGGGATCGATCAAGAAGAAACCGAACAGTCAATGGATATCATGTGGCGAGTGATCCATCCCAAATTAGGTTCCAATGTGGTTGCAGTCAAACCATCTGCCCAATTAATAACTTCTGTGGTGTCTTCGTGGTCTTTTCTCCTCTCTACCATGGACGATATGAACCTAAATTCAAAAAATTGGCAAAATCAAATATCTTATTTATCGGGTCTTCTGGACAAGGAAGATCGGACTGTACGAATTGCTGCTGGTGAAGCTCTGGCTCTTATTTTTGAGATTGGAACTACAGAGAAATTTTATACTGATTCTAGGAGTGCAGAAGAGAGTAAAACACAAGAAAGTTACATATGTTTACAAGGATTGAAAGGGAAGGTCATAAATCAATGCAGAGACCTTTCTGTGGAGGCCGGTGGCAAGGGTTCTGCCAAAAAGGATCTTAATAGCCAGAGGAACTTGTTCCGAGATATTTTAGAATTTTTTGAGTATGGTTACTCCCCCGAAACTTCAACAAAGATTGGTGGTGATTCCTTGCAGACATCATCGTGGTCCCAAATGATTCAGTTAAATTTTCTCAAGCACTTTCTTGGGGGTGGGTTTATTAAGCATATGCAGGAAAATGAGTTCCTTCATGATGTCTTTGATTTCACGCCGAAGAGAAAGTTCAATAATAGCGAACAGAGAATGTCTGGTGGTGAGAAGAGATTGTTTAAGTCTCCAAATTCAGTACTGAACAAGGCTAGAACCCAATATCTTAATAAGCAGCGTTTGCAAGCTGAGGGAAGGAACTTCGGCCACTATGCTGTCAGTGTCCCTGAGGAGGAGGCTTGA 1332 0.4129 MGKRNSQRKSAAMFDTDDDSSVTSSSTSRSDMMSVYGGEDVQFYQDSVLDQALDALDEKRGSTRENALSSIIDAFNSNIQHDFVEKKFATLLHHCLASLKKGSKKASAKEISLASHAIGCLALTVGCGNNAREIFEESVRPLDESLASKSDVSKIPSLLECLAIITFVGGIDQEETEQSMDIMWRVIHPKLGSNVVAVKPSAQLITSVVSSWSFLLSTMDDMNLNSKNWQNQISYLSGLLDKEDRTVRIAAGEALALIFEIGTTEKFYTDSRSAEESKTQESYICLQGLKGKVINQCRDLSVEAGGKGSAKKDLNSQRNLFRDILEFFEYGYSPETSTKIGGDSLQTSSWSQMIQLNFLKHFLGGGFIKHMQENEFLHDVFDFTPKRKFNNSEQRMSGGEKRLFKSPNSVLNKARTQYLNKQRLQAEGRNFGHYAVSVPEEEA* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2875 443 MobiDBLite consensus disorder prediction 16 31 - -
Amo17g2875 443 Pfam Interferon-related developmental regulator (IFRD) 24 329 IPR007701 -
Amo17g2875 443 Gene3D - 13 282 IPR011989 -
Amo17g2875 443 MobiDBLite consensus disorder prediction 1 31 - -
Amo17g2875 443 PANTHER INTERFERON-RELATED DEVELOPMENTAL REGULATOR 1 435 IPR039777 -
Amo17g2875 443 Pfam Interferon-related protein conserved region 374 423 IPR006921 -
Amo17g2875 443 PANTHER INTERFERON-RELATED DEVELOPMENTAL REGULATOR 2-LIKE ISOFORM X1 1 435 - -
Amo17g2875 443 SUPERFAMILY ARM repeat 37 264 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2875 Amo-Chr17 130875055 130879153 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0802 08 14159238 14162938 Amo17g2875 17 130875055 130879153 hybridization
Amo16g3808 16 149761611 149767316 Amo17g2875 17 130875055 130879153 PCT
Amo17g2875 17 130875055 130879153 Amo16g3808 16 149761611 149767316 PCT