Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2872 ATGGAAACGGATATTCCGGTGGCCAATTACACTTACATGGGCAGGACTTTCACTCAACTCGCCCTCGSTGACCATTCCTCTTCRGCTTTCAGCGACTGCAACAGCGACAGATCTGGCGAGTTCRCCACCACTTCCTCACAAGCTCGCCGCCTCRTTATTGCCTGCYCCGCCGACAACTCCSARGACCTCATCACCCACCTCGTCACCGAACTCCAATCCTCTTCCATRGAAGACCAAAAACAAGCTGCCATGGAGATCAGACTTCTCGCCAAGAACAAGCCCGAAAACCGCCTCAAGATCGCCAAAGCTGGCGCCATCAAACCTTTAATCTCCCTCGTTTCATCTCAGGACCTTCAGCTTCAGGAATACGGCGTCACCGCCATTCTCAACCTCTCCCTCTGCGACGACAACAAAGACGCCATCGCTTCTTCTGGAGCCATTAAGCCCCTTGTTCGTGCACTCAAGACGGGTACTCCAGCGGCCAAAGAGAACGCCGCCTGCGCTCTCCTTCGTCTCTCGCAGGTGGAAGAGAACAAGCTGGCGATAGGGAGGTGCGGGGCGATTCCGCCGCTGGTAAGCCTTTTAGAAAGCGGAGGTTTACGAGCTAAGAAGGACGCGTCGACGGCGCTGTACTCGCTGTGCTCGTCAGTGAAGGAGAACAAGATCAGGGCAGTCAAGGCCGGGATCATGAAAGTGCTGGTGGAGCTCATGGCAGACTTCAGTGGGAATATGGTGGACAAGTCAGCTTACGTGGCAAGCGTTTTGGTTTCGGTAATGGAGGCAAGGGCAACGCTGGTGGAGGAAGGAGGGATACCGGTGTTAGTGGAGATGGTGGAGGTTGGGACGCAGAGGCAGAAGGAAATCGCGGCGGTTATTCTGTTACAGGTGTGCCAAGACTGCGTGATTTACCGTACGATGGTGGCGCGCGAAGGTGCGATTCCTCCTCTGGTTGCTCTGTCGCAGAACGGCACCAACCGCGCCAAGCAAAAGGCGGAGACACTGATAGAACTTCTACGGCAACCAAGATCCGGCAACGGCGCTGCTCCTCGTACATCATCATAA 1062 0.5499 METDIPVANYTYMGRTFTQLALXDHSSSAFSDCNSDRSGEFXTTSSQARRLXIACXADNSZDLITHLVTELQSSSXEDQKQAAMEIRLLAKNKPENRLKIAKAGAIKPLISLVSSQDLQLQEYGVTAILNLSLCDDNKDAIASSGAIKPLVRALKTGTPAAKENAACALLRLSQVEENKLAIGRCGAIPPLVSLLESGGLRAKKDASTALYSLCSSVKENKIRAVKAGIMKVLVELMADFSGNMVDKSAYVASVLVSVMEARATLVEEGGIPVLVEMVEVGTQRQKEIAAVILLQVCQDCVIYRTMVAREGAIPPLVALSQNGTNRAKQKAETLIELLRQPRSGNGAAPRTSS* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2872 353 PANTHER U BOX DOMAIN-CONTAINING 1 347 - -
Amo17g2872 353 SMART arm_5 93 133 IPR000225 GO:0005515
Amo17g2872 353 SMART arm_5 175 215 IPR000225 GO:0005515
Amo17g2872 353 SMART arm_5 134 174 IPR000225 GO:0005515
Amo17g2872 353 SMART arm_5 216 257 IPR000225 GO:0005515
Amo17g2872 353 SMART arm_5 258 298 IPR000225 GO:0005515
Amo17g2872 353 SMART arm_5 300 340 IPR000225 GO:0005515
Amo17g2872 353 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 104 146 IPR000225 GO:0005515
Amo17g2872 353 Pfam Armadillo/beta-catenin-like repeat 177 215 IPR000225 GO:0005515
Amo17g2872 353 Pfam Armadillo/beta-catenin-like repeat 94 132 IPR000225 GO:0005515
Amo17g2872 353 Pfam Armadillo/beta-catenin-like repeat 135 173 IPR000225 GO:0005515
Amo17g2872 353 Gene3D - 42 199 IPR011989 -
Amo17g2872 353 Gene3D - 206 342 IPR011989 -
Amo17g2872 353 SUPERFAMILY ARM repeat 59 335 IPR016024 -
Amo17g2872 353 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE ISOFORM X1 1 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2872 Amo-Chr17 130778601 130781052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2872 28 345 U-box Gene Family AT2G23140 46.646 1.94e-81 258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0793 08 14070379 14072525 Amo17g2872 17 130778601 130781052 hybridization
Amo16g3812 16 149843299 149846315 Amo17g2872 17 130778601 130781052 PCT
Amo17g2872 17 130778601 130781052 Amo16g3812 16 149843299 149846315 PCT