Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2839 ATGGCTCCCTACCATCTCCAAGACGCTCTATACTGCTCAGAGGAAGAGGATGAATTAGAACAAGATGAGGGTTCCGGGTTGGTAGAAGGGGACATGTTTTGGGATGATGAGGAGCTTGCGTGGATGCTGGCCAGGGAAGAACAACACACAACACACACCCCTCTCTGCTTCCAATTGGAGTCTGCTCGCAGAGAGGCGGTGGAGTGGATACTCAAAGTCAGCTCACATTACTCCTTCTCTCCTCTCACTTCTCTTCTTGCCGCCAACTACCTTCACAGGTTCCTCTTCACTTTCTCCTCCATTAACAATCTCAATAAGCCATGGATGACTCAGCTGGCTGCCGTCGCTTCTCTCTCACTCGCTGCCAAGCTTGAAGAGACTCATCTCCCCCACTTACTAGACCTCCAAGTGGAGGATTGCAGATACGTGTTCGAAGCCAAAACCATCAAAAGGATGGAGATTTTGGTGCTTTCAACTCTCCGATGGAAAATGAATCCCGTCACTCCTCTCTCTTTTCTCGACTATATCACACGAAGACTTGGATTATTCAACTCCAACGACTTCTTCACCAGATCCCAATCCCTTCTTCTATCTACCCTTCCAGATAGCAGGTTCATGAGTTACCTTCCTTCTGTGGTGGCAACTGCCACAATGATGCACGTGTTGAATAGCGTGGAGCAGCGAAACCAGGTGGTACGCATTCTTGGAACGAAGAAAGAGAAGGTGGATGAATGCTTGAAGCTGATATGGGAACAGGGGAACAAGAAACGCAAGTTTGGATGGGTTCCAGATAGTCCAAACGGCGTCATGGATGTGTCGTTTAACTCTGCCTCTGATGATAGCTCCAATGATTCATGGCCTCTACTACTTGCTAATAATAATAACAACAATGTTTCTTCACCGGAACCTAAGAAGAATAGGACTCTACTAAACCCTCCCAACTCATCCCATTTCATTTAG 960 0.4729 MAPYHLQDALYCSEEEDELEQDEGSGLVEGDMFWDDEELAWMLAREEQHTTHTPLCFQLESARREAVEWILKVSSHYSFSPLTSLLAANYLHRFLFTFSSINNLNKPWMTQLAAVASLSLAAKLEETHLPHLLDLQVEDCRYVFEAKTIKRMEILVLSTLRWKMNPVTPLSFLDYITRRLGLFNSNDFFTRSQSLLLSTLPDSRFMSYLPSVVATATMMHVLNSVEQRNQVVRILGTKKEKVDECLKLIWEQGNKKRKFGWVPDSPNGVMDVSFNSASDDSSNDSWPLLLANNNNNNVSSPEPKKNRTLLNPPNSSHFI* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2839 319 Gene3D - 52 165 - -
Amo17g2839 319 PANTHER CYCLINS 15 302 IPR039361 -
Amo17g2839 319 SUPERFAMILY Cyclin-like 150 253 IPR036915 -
Amo17g2839 319 Pfam Cyclin, C-terminal domain 167 253 IPR004367 -
Amo17g2839 319 SUPERFAMILY Cyclin-like 33 165 IPR036915 -
Amo17g2839 319 CDD CYCLIN 63 95 IPR013763 -
Amo17g2839 319 Pfam Cyclin, N-terminal domain 48 165 IPR006671 -
Amo17g2839 319 PANTHER CYCLIN D3.1 PROTEIN 15 302 - -
Amo17g2839 319 Gene3D - 42 247 - -
Amo17g2839 319 MobiDBLite consensus disorder prediction 285 319 - -
Amo17g2839 319 SMART Cyclin_C_2 167 283 IPR004367 -
Amo17g2839 319 SMART cyclin_7 171 251 IPR013763 -
Amo17g2839 319 SMART cyclin_7 68 158 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2839 Amo-Chr17 130396177 130397526 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2839 2 307 Core Cell Cycle Gene Families AT5G67260 43.149 2.55e-77 240
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2839 17 130396177 130397526 Amo11g1061 11 31315571 31318071 ECH
Amo17g2839 17 130396177 130397526 Amo19g4168 19 158217061 158218951 ECH
Amo17g2839 17 130396177 130397526 Amo17g2839 17 130396177 130397526 ECH
Amo06g3073 06 97642277 97644480 Amo17g2839 17 130396177 130397526 PCT
Amo17g2839 17 130396177 130397526 Amo06g3073 06 97642277 97644480 PCT