Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2568 ATGTTGCCATCAAGTGTAGATCACCATATCATGCTGCATAACCATATCCCTATGCCTATGCCACCAAGCTGGAAACCTACCATAGAGGTAGCCCCTAACTGCCCCCGCTGCGCTTCAACCAACACCAAATTCTGTTACTACAACAACTACAGCCTCTCTCAGCCTCGCTACTTCTGTAAGGCCTGCCGCCGATACTGGACTAAAGGCGGCTCCCTCCGCAATGTCCCCGTCGGCGGTGGATGCCGCAAGAACCGCCGTTCCAAGTCCGCCAGAAACCAAACGCAACACCGCCTTCAGGGAGAAGACTACTCATCGTCATCTGCTGATGCTCATCAACCATCATCATCACGTGACATAGACATGGCGGTTGTGTTTGCCAACTTCTTGAACCAAGCTCCAATAAGTGAGGATCATGGCGGTTCGTCTTCCTCCAGCGGTGAGACCGAGAACGATGCAGTAGTTGTGCAGCCGAAGAAGAACAATGATTTCGGAGTTCTATGTGCTGACGTGGAACCTTCTTCGTTTGAACAAGAACTGAGTCTGATGAGTGGGATCGAGTTGGATGGATTTGATGATGTGGTCCAACATGATGATGGTGTTGCTACATGGCAACCACCACTACCACCACCATCAATGATGCAGATGCAGGAGATGGAATTCTCCATGGTGCCATTGATGAATGAGCATCATGATGATGATGATGAGTTATTGATGATGCCATCTTCTATGAATTTAGTAAGTGATGACGCTTCTTGGAACACTAATAATTGGAGTTCTTTTGATCTTTCCACCATGGAAGTCTTCTCCTCCTCGTCATCAATTAATTAA 828 0.4795 MLPSSVDHHIMLHNHIPMPMPPSWKPTIEVAPNCPRCASTNTKFCYYNNYSLSQPRYFCKACRRYWTKGGSLRNVPVGGGCRKNRRSKSARNQTQHRLQGEDYSSSSADAHQPSSSRDIDMAVVFANFLNQAPISEDHGGSSSSSGETENDAVVVQPKKNNDFGVLCADVEPSSFEQELSLMSGIELDGFDDVVQHDDGVATWQPPLPPPSMMQMQEMEFSMVPLMNEHHDDDDELLMMPSSMNLVSDDASWNTNNWSSFDLSTMEVFSSSSSIN* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2568 275 PANTHER DOF ZINC FINGER PROTEIN DOF1.2 24 162 - -
Amo17g2568 275 MobiDBLite consensus disorder prediction 76 115 - -
Amo17g2568 275 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 24 162 IPR045174 GO:0003700|GO:0006355
Amo17g2568 275 Pfam Dof domain, zinc finger 32 86 IPR003851 GO:0003677|GO:0006355
Amo17g2568 275 ProSiteProfiles Zinc finger Dof-type profile. 32 86 IPR003851 GO:0003677|GO:0006355
Amo17g2568 275 MobiDBLite consensus disorder prediction 93 114 - -
Amo17g2568 275 ProSitePatterns Zinc finger Dof-type signature. 34 70 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2568 Amo-Chr17 124524997 124526222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2568 1 267 C2C2-Dof Transcription Factor Family AT1G21340 36.237 4.79e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Amo17g2568 zf-Dof 3.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2568 - - adu:107460580 539.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2568 17 124524997 124526222 Amo17g2568 17 124524997 124526222 ECH