Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2457 ATGGACACAGCTCAGTGGGCACAGGGAATAGGAGTGGTAAAAGCAATGGAAGGTTCGTCAACAAAAGCGTGTTCTTCATCATCTTCGGTGTTAGAGAGAAGAACAAGGCCAGTGAAGGATCAAGCACTTAACTGTCCACGGTGCAACTCAACCAACACAAAATTCTGTTACTACAACAACTACAGCCTCTCTCAGCCACGCTACTTCTGCAAAACTTGCAGAAGGTATTGGACTGAAGGTGGTTCCTTGAGAAACGTTCCCGTTGGCGGCGGTTCCAGAAAGAACAAGAGATCCTCCTCCACTCCTCCATCATCATCTTTAACTAATAAGAACCCAAAGATCATCCATCAAGGACAAGATCTTAACTTAGCATATCCACCACCACCACCCCCTCCTCATCCTCATCATGACGATTCTGCTACGGAGTTTCTGAGAAGTGGGATCAATACTACTACTAATACTTCAAGGGGATTGAATTCTTTTATGCCGATGTCGCTTTCGGATTCTACAATGTATAGTACGGCAGGGTTTGGTGCTCCAATGCAAGAGTTCATCAAATCTGGTGGACTTAACTTTAGTCTTGAAGAAGGGTTTGAGAGTGGTGGTGGTGCAAGGGTTTTGTTTCCTTCTTCGGAGGAAAAGAATACCAATAGAACTGATTCAACTACTGCTGGCTTTTGGAATGGCATGCTAGGTGGAGCATCATGGTAG 711 0.4501 MDTAQWAQGIGVVKAMEGSSTKACSSSSSVLERRTRPVKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSSTPPSSSLTNKNPKIIHQGQDLNLAYPPPPPPPHPHHDDSATEFLRSGINTTTNTSRGLNSFMPMSLSDSTMYSTAGFGAPMQEFIKSGGLNFSLEEGFESGGGARVLFPSSEEKNTNRTDSTTAGFWNGMLGGASW* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2457 236 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677|GO:0006355
Amo17g2457 236 Pfam Dof domain, zinc finger 40 97 IPR003851 GO:0003677|GO:0006355
Amo17g2457 236 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677|GO:0006355
Amo17g2457 236 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 109 IPR045174 GO:0003700|GO:0006355
Amo17g2457 236 MobiDBLite consensus disorder prediction 84 141 - -
Amo17g2457 236 PANTHER DOF ZINC FINGER PROTEIN DOF4.6-LIKE 1 109 - -
Amo17g2457 236 MobiDBLite consensus disorder prediction 92 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2457 Amo-Chr17 121810004 121811431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2457 33 236 C2C2-Dof Transcription Factor Family AT3G61850 41.948 5.31e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Amo17g2457 zf-Dof 8.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2457 - - adu:107460523 412.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2457 17 121810004 121811431 Amo17g2457 17 121810004 121811431 ECH
Amo08g0423 08 8199679 8201001 Amo17g2457 17 121810004 121811431 hybridization