Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2387 ATGAGGAGGATCGGAAGCTACATAACACAGGGCGTTTACACTGTTTCAGGGCCCTTCCACCCGTTCGGCGGCGCCGTCGACATCGTCGTCGTGGAGCAGCCAGATGGAACCTTCAAGTCTTCTCCTTGGTACGTCCGATTCGGGAAATTCCAAGGCGTTCTGAAAGCAAGGGAGAAGATCGTTGACATCAATGTGAATGGCATCGACGCTGATTTCCACATGCATCTTGATCACAAAGGTGAAGCTTATTTCCTCAGGGAAGTAGATGCTGAATATGGTGACGCCGTTATTTATCCGTCTTCTGGTGATGAATATGATGATAACCGCTCCCGTCATCTTAACGACATGCAAATACAAGAACGCCTCAGGTCCAAAAGCTGCAACTATGATTCAGAAAATAGTAATGGGAATGCTGGGACAAGGTCTCGCGGCTCGTTACTTGGCTTTGTGTTTGGGCGAAAGTCCATAGAGGAAGGTGAAGAATGTGGTGATAAGTACGGAGTTGAACAAATGGCGCCTGCTGAGATAGCTGCAGATTTGTTGGAGCTTAAGTGGTCTACGAATATCAAAAGTGATCGCCGACCACCACGTTTTGTGGATAAACGCAAAATTGCAAAGAGTTCATCCGATGGTGATGTACTTCAAGAAGCTTTGCCACCTCTTGAGGTAAAGGAGGAAGAAGCTTCTTCTTTTTCCAATTCTAACTCTGAGCATGGACATGATAAGACTATGATAAAGATTGACGTTGCGCATGAGGTTGAATGTGACTCCAATGGAAAGCAAGGTGGACTTGCTCATGAATGTGCTGATTTTCCCGTTGAACTTGTGGAAGTTGAAGCAGGAGGGGGGTTCGAGAGGAAATTAAGTGACGGAGAGCTTGCTCCTGTCAGTGCTTTTGCTTCGCCGACTGGTGTTTCTTCAGTGGACGACAACATTTCGGCTGATGAAGTTGCTCAGTCTGTGGTTTTCTTCGAGACATCGGAGAAAGCGACGGTGGAATGTGCAAACGAGAGTAGTGCAACGAGCCATGATGTCTCTAGCACATTTTCTCCTCCTAAGGATTTGCTTGGTGTACAAGCAACAACTAAATCACCAGCAGCAGGTTTAGTGGAAGAAGAAAACTTCCTTTTTAGTGACCTTGATGAAAGTAAAATCAATGATCAATTGGATAGACCAGTGTCCCCTGAATCCGTAGATAAGGAAGAAGAAGAAGAAGAAGAAGAAGAACATCATTCTTGTGATGATGGCGATGTTAAAGATGAAAACTTAGTTAGTGAAAATGGCGATTTGCATTCGTCCAGTCCTATGGCTATCCCTAGAACTGAGGCTGCTGGGGAGGATATTGGGCATACAGGATCATTGCCTAACATTACTACTCGTAGCGTCAGCTTGGGCCAACCTGAGGCTTCTTATCCTTTAAGTCAATCACTAGACACAAGATCCAAATCCTTGCCGTGGTTATTTCCTGAAAATGAAGATTCAAGTGAAGCCAATGGAAACCAGTTGTCAAATGCGAAGTCAGGGGTCGGTAGCCCACCTTCTGGTTGGAGACTTTGGCCTTTCTCCAGATCAGTATCCCAAACTTATGTGCCGCCTATGCCAAGTGATACCAAAGATACTACTTTTGAGCAGTCTTCGGAGAATACAATCAGCACAGATCCGAACAAAAATGAGCTCAAGACTGACCCAAAGAAAAAGCATGTTAGGGTAAAAGTTCCAACTTCTGAACAGATAGCATCGCTGCATCTGAAGGAAGGGGGTAATACTGTAATGTTCACTTTCTCTACAGCAATGCTTGGGAGGCAGCAGGTTGATTGTCGAATATATTTATGGAAATGGAATACTCGTATAGTGATCTCAGATGTGGATGGGACAATTACAAAGTCAGATGTTTTAGGTCAATTCATGCCTTTGGTTGGTATTGATTGGTCACAGACAGGTGTTGCACACTTATTCTCAGCTATCAAGGAGAATGGTTACCAACTGCTATTTCTCAGTGCCCGTTCAATTTCTCAAGCATATCTCACACGCCAGTTCCTATTCAACCTTAAACAGGATGGGAAAGCTCTACCAGATGGTCCTGTTGTTATTTCTCCTGATGGACTTTTTCCATCTCTATATCGTGAAGTTATTAGGAGGGTTCCTCATGAGTTCAAAATTGCATGCCTGGAGGATATCAAGTCACTTTTTCCTTCTGATTGCAATCCATTCTATGCTGGTTTTGGAAATAGGGATACTGATGAAATCAGCTACCTTAAGGTTGGAATCCCAATAGGAAAAATATTCATTATTAATCCCAGGGGAGAGATCGTTGTAAACCGTCGAATTGACACAAAATCGTATACTTCTCTCCATGCACTCGTGAATGGGATGTTCCCCCCTAAGATCTCCTCTTCTGAACAGGTTAGGAGCTTTCTTTTTAATTTGGTTCTTCAACATCTCCGACAATTTTCTACGTATTTAATTTGGGCATTCTTAATAATCTAA 2487 0.4367 MRRIGSYITQGVYTVSGPFHPFGGAVDIVVVEQPDGTFKSSPWYVRFGKFQGVLKAREKIVDINVNGIDADFHMHLDHKGEAYFLREVDAEYGDAVIYPSSGDEYDDNRSRHLNDMQIQERLRSKSCNYDSENSNGNAGTRSRGSLLGFVFGRKSIEEGEECGDKYGVEQMAPAEIAADLLELKWSTNIKSDRRPPRFVDKRKIAKSSSDGDVLQEALPPLEVKEEEASSFSNSNSEHGHDKTMIKIDVAHEVECDSNGKQGGLAHECADFPVELVEVEAGGGFERKLSDGELAPVSAFASPTGVSSVDDNISADEVAQSVVFFETSEKATVECANESSATSHDVSSTFSPPKDLLGVQATTKSPAAGLVEEENFLFSDLDESKINDQLDRPVSPESVDKEEEEEEEEEHHSCDDGDVKDENLVSENGDLHSSSPMAIPRTEAAGEDIGHTGSLPNITTRSVSLGQPEASYPLSQSLDTRSKSLPWLFPENEDSSEANGNQLSNAKSGVGSPPSGWRLWPFSRSVSQTYVPPMPSDTKDTTFEQSSENTISTDPNKNELKTDPKKKHVRVKVPTSEQIASLHLKEGGNTVMFTFSTAMLGRQQVDCRIYLWKWNTRIVISDVDGTITKSDVLGQFMPLVGIDWSQTGVAHLFSAIKENGYQLLFLSARSISQAYLTRQFLFNLKQDGKALPDGPVVISPDGLFPSLYREVIRRVPHEFKIACLEDIKSLFPSDCNPFYAGFGNRDTDEISYLKVGIPIGKIFIINPRGEIVVNRRIDTKSYTSLHALVNGMFPPKISSSEQVRSFLFNLVLQHLRQFSTYLIWAFLII* 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2387 828 PANTHER GH19076P 1 820 - -
Amo17g2387 828 PANTHER LIPIN 1 820 IPR026058 -
Amo17g2387 828 SUPERFAMILY HAD-like 609 761 IPR036412 -
Amo17g2387 828 MobiDBLite consensus disorder prediction 485 513 - -
Amo17g2387 828 SMART lns2 617 773 IPR031315 -
Amo17g2387 828 MobiDBLite consensus disorder prediction 381 437 - -
Amo17g2387 828 MobiDBLite consensus disorder prediction 335 356 - -
Amo17g2387 828 MobiDBLite consensus disorder prediction 532 563 - -
Amo17g2387 828 Pfam LNS2 (Lipin/Ned1/Smp2) 572 793 IPR013209 -
Amo17g2387 828 Pfam lipin, N-terminal conserved region 8 92 IPR007651 -
Amo17g2387 828 MobiDBLite consensus disorder prediction 493 510 - -
Amo17g2387 828 MobiDBLite consensus disorder prediction 532 556 - -
Amo17g2387 828 MobiDBLite consensus disorder prediction 381 398 - -
Amo17g2387 828 MobiDBLite consensus disorder prediction 412 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2387 Amo-Chr17 119790866 119797444 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2387 17 119790866 119797444 Amo17g2387 17 119790866 119797444 ECH
Amo16g3856 16 150392211 150393413 Amo17g2387 17 119790866 119797444 PCT
Amo17g2387 17 119790866 119797444 Amo16g3856 16 150392211 150393413 PCT