Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2385 ATGTCTGGTCATGGTGAACACCATAGCGTTCCCCTTTCGGTGCTGCTGAAGCGCGAATTGGTGAACGAGAAAATCGAGAAGCCGGAGATTGTGTACGGCCAAGCCAGCCAGAGCAAGAAAGGAGAGGATTTTATTCTGCTTAAGAACGAATGCCAGAGGGTCATGGGAGATGGCGTCTCCACATTTTCTGTTTTCGGGCTATTTGATGGTCACAATGGAACTGCTGCTGCTATTTATGCCAAGGAGAATCTTCTAAACAACATTTTAAGTGCAATTCCTTCAGATCTTAACAGAGATGAGTGGATAGCAGCATTGCCCAGGGCTTTGGTTGCAGGATTTGTGAAAACTGACAAAGATTTTCAACAGAAAGCAAAAACATCGGGAACAACTGTAACCTTTGTGATTCTTGAAGGATGGGTGGTAACAGTTGCATCAGTTGGTGATTCGCGTTGCGTACTTGAACCTGCTGAAGGTGGTATTCATTACTTGTCAGCGGATCATAGACTTGAAACCAATGCAGAAGAGAGGGTCCGCATAACCTGTAGCGGGGGTGAGGTTGGCCGGCTAAATACAGGTGGAGGAGCAGAGGTTGGCCCTTTGAGATGTTGGCCTGGTGGCTTGTGTCTTTCGAGATCCATTGGTGATGCGGATGTTGGTGAATTTATTGTTCCTGTACCATATGTAAAGCAAGTGAAGCTTTCTAGTGCCGGAGGAAGGCTTGTTATCAGCAGTGATGGTGTCTGGGACTCTCTAACTCCAGAAGTGGCCTTGGATTGTTGTCGTGGCATGTCAGCAGAGGCTGCAGCACCACAAATTGTGAATGAAGCTTTACAAGCAAAGGGTCTTAGAGATGACACAACTTGCATTGTTGTTGATATATTACCCCAAGAGCAGCCGCATACTTCTGTACGAACTCAAAAGAAACCGATGAAAGGAATTATGAAGATCTTCCGCAAAAAGGGCTCTGAATCATCATCTCATACCAACAAAGAATATGTAGAGCCAGATATTGTACGGGAGCTCTATGAGGAAGGTTCTGCTATGCTTTCAGAGAGGTTAGAGACAAAATATCCACTCTGCAACATGTTCAAGTTGTTTATCTGTGCTGTGTGTCAAGTAGAAATCAAACCAGGGGAGGGTATCTCAATACATGCGGGGAAGACCAACCCCGGAAAATTGCGTCCGTGGGATGGACCTTTTCTTTGCTCAAGTTGCCAAGAGAAGAAGGAAGCCATGGAAGGGTTACGGAAATCAGGAAGACATCGTGGCAGTGACAGTGACGACTAA 1287 0.4592 MSGHGEHHSVPLSVLLKRELVNEKIEKPEIVYGQASQSKKGEDFILLKNECQRVMGDGVSTFSVFGLFDGHNGTAAAIYAKENLLNNILSAIPSDLNRDEWIAALPRALVAGFVKTDKDFQQKAKTSGTTVTFVILEGWVVTVASVGDSRCVLEPAEGGIHYLSADHRLETNAEERVRITCSGGEVGRLNTGGGAEVGPLRCWPGGLCLSRSIGDADVGEFIVPVPYVKQVKLSSAGGRLVISSDGVWDSLTPEVALDCCRGMSAEAAAPQIVNEALQAKGLRDDTTCIVVDILPQEQPHTSVRTQKKPMKGIMKIFRKKGSESSSHTNKEYVEPDIVRELYEEGSAMLSERLETKYPLCNMFKLFICAVCQVEIKPGEGISIHAGKTNPGKLRPWDGPFLCSSCQEKKEAMEGLRKSGRHRGSDSDD* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2385 428 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 3 422 - -
Amo17g2385 428 CDD PP2Cc 39 293 IPR001932 -
Amo17g2385 428 Pfam Protein phosphatase 2C 42 283 IPR001932 -
Amo17g2385 428 PANTHER ALPHABET, ISOFORM E-RELATED 3 422 - -
Amo17g2385 428 Gene3D - 31 302 IPR036457 -
Amo17g2385 428 ProSiteProfiles PPM-type phosphatase domain profile. 31 293 IPR001932 -
Amo17g2385 428 SMART PP2C_4 21 291 IPR001932 -
Amo17g2385 428 SUPERFAMILY PP2C-like 37 293 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2385 Amo-Chr17 119781642 119785763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2385 1 427 PP2C-type Phosphatase Gene Family AT1G47380 77.103 0.0 700
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2385 17 119781642 119785763 Amo17g2385 17 119781642 119785763 ECH
Amo16g3858 16 150410609 150415896 Amo17g2385 17 119781642 119785763 PCT
Amo17g2385 17 119781642 119785763 Amo16g3858 16 150410609 150415896 PCT