Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2353 ATGAAAGCTACTACTCCTCCTCCTTACACAGCAATGCCAATTCAAATGCAAAGCTTTTCTTCATCCGCGTTATTGGCGGAGCCAGACCTCTCCTTAAACATTAGCCCTCCTTTCCTTTCTGCCAAAGGAACATTCAAAGATATGTGCTCCTCAATCTCTGATTCAGGTAGTAGTGGAAGCGATGCAAGCCATGATAATAATAATAATAATAATAATTGCTTCTTTCACCACACCCACACTGTTCCACAACCGACATTGACATTAGGGTCTGGACCTGCATCAAACTTGAATCATCATCATCATTATCATCATCTCCATCAGTATCMAATGCAAGGGCTCTCAAGAAACTACTTCAATCATCATCCTCACCAACCTCAAATCCATTGCCGCTCCGATTTCAAACGAAATGGTGGCGGGAGAAGAAGCATGAGAGCTCCCAGAATGAGATGGACTACCACACTCCATGCTCATTTTGTTCATGCTGTTCAGCTTCTTGGCGGTCATGAAAGGGCAACTCCGAAGTCAGTGTTAGAGTTAATGAATGTTAAGGATCTAACTCTAGCTCACGTCAAGAGTCACTTGCAGATGTATAGAACAGTGAAGAGCACTGACAAAGTCCCAGGTAATAATAATAATAATAATAATCTTGGAGATGCGCTAGCTGTTGTATGTAATGGTCACAAGGTAGATATGGGGTTCGAGCAGCAAAGGCAAGAGGTCGTTGTGGATCATCTGCATGCTCAGAGAGGCCTTCTCCAACACCCACTGGTGCAACTGCAACAATCCCAAAGGTCATCATGTCAATCACCACTACTAGAGACAAATACAAATATTACTCGACAAAAACCCGATATCAGCTTCGTGTATTCTCGTCTCCAAGATGGCAATGAAATCATGAATAATCACGGAGGGTTGTCGAATTACTTGAAGATGAAGGAGAGCTCGGACTGTAACAATTTATCGTCAGATTCAGAAGGCGTTATTGATCTGGAATTCACTCTTGGAAGGCCAACACACCATCAGGATGAATCATCAAGAGAGTTAACTCTTCTCAAGTGTTAA 1062 0.4256 MKATTPPPYTAMPIQMQSFSSSALLAEPDLSLNISPPFLSAKGTFKDMCSSISDSGSSGSDASHDNNNNNNNCFFHHTHTVPQPTLTLGSGPASNLNHHHHYHHLHQYXMQGLSRNYFNHHPHQPQIHCRSDFKRNGGGRRSMRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKVPGNNNNNNNLGDALAVVCNGHKVDMGFEQQRQEVVVDHLHAQRGLLQHPLVQLQQSQRSSCQSPLLETNTNITRQKPDISFVYSRLQDGNEIMNNHGGLSNYLKMKESSDCNNLSSDSEGVIDLEFTLGRPTHHQDESSRELTLLKC* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2353 353 MobiDBLite consensus disorder prediction 125 139 - -
Amo17g2353 353 MobiDBLite consensus disorder prediction 116 143 - -
Amo17g2353 353 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 23 353 IPR044847 GO:0000976|GO:0006355|GO:0010158
Amo17g2353 353 SUPERFAMILY Homeodomain-like 143 200 IPR009057 -
Amo17g2353 353 MobiDBLite consensus disorder prediction 50 76 - -
Amo17g2353 353 Pfam Myb-like DNA-binding domain 147 198 IPR001005 -
Amo17g2353 353 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 146 199 IPR006447 GO:0003677
Amo17g2353 353 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 23 353 - -
Amo17g2353 353 Gene3D - 145 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2353 Amo-Chr17 118848997 118851923 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Amo17g2353 Myb_DNA-binding 1.6e-05 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2353 17 118848997 118851923 Amo17g2353 17 118848997 118851923 ECH
Amo08g0368 08 7213780 7216643 Amo17g2353 17 118848997 118851923 hybridization
Amo16g3910 16 150884425 150890328 Amo17g2353 17 118848997 118851923 PCT
Amo17g2353 17 118848997 118851923 Amo16g3910 16 150884425 150890328 PCT