Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2303 ATGCCCTCCTCCGACTCCGGCGAAAGCCATCGATCAGCCAAGCCTCACAACACTTCCCTAGCCCCACCGCCGGCCGAGCAAGAGCACCTGCCATGCCCTCCCTGCGACTCTACTAATACCAAGTTCTGCTACTACAACAACTACAAGTTCTCCCAGCCTCGCCACTTCTGCAAGTCCTGCCGCCGCTACTGGACCCACGGCGGCACTCTCCGTGACATCCCCGTCGGCGGTGGAAGCCCACCCGTGCAGTTCGGTGGGAGCTTCACTTCGTTGCTGAGCAACACACAGCAGGGTCCTGGTGGGTTTCTGGCTCTGGGTGGGTTCGGGCTTGGTCTTGGGCCTGGTCTCGAAGATGTTGGATTTGGGATGGGGATGGGGAGAGGCCGTTGGGCTTTCCCGGGCGTGGTGGCGGACGGAGGCAGCATTGGCGGCGGTGTTGCGGGCTCCGGTGTTGGGCACACGTGGGGTGAGGGGGAGTGGGGTTACGGGAGTGGGGTGACCGGGAGTGGGGTGAGGGGGTGA 522 0.6379 MPSSDSGESHRSAKPHNTSLAPPPAEQEHLPCPPCDSTNTKFCYYNNYKFSQPRHFCKSCRRYWTHGGTLRDIPVGGGSPPVQFGGSFTSLLSNTQQGPGGFLALGGFGLGLGPGLEDVGFGMGMGRGRWAFPGVVADGGSIGGGVAGSGVGHTWGEGEWGYGSGVTGSGVRG* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2303 173 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 80 IPR045174 GO:0003700|GO:0006355
Amo17g2303 173 Pfam Dof domain, zinc finger 28 79 IPR003851 GO:0003677|GO:0006355
Amo17g2303 173 ProSitePatterns Zinc finger Dof-type signature. 32 68 IPR003851 GO:0003677|GO:0006355
Amo17g2303 173 ProSiteProfiles Zinc finger Dof-type profile. 30 84 IPR003851 GO:0003677|GO:0006355
Amo17g2303 173 MobiDBLite consensus disorder prediction 1 16 - -
Amo17g2303 173 PANTHER DOF ZINC FINGER PROTEIN DOF3.4 1 80 - -
Amo17g2303 173 PANTHER DOF ZINC FINGER PROTEIN DOF3.4 83 159 - -
Amo17g2303 173 MobiDBLite consensus disorder prediction 1 29 - -
Amo17g2303 173 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 83 159 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2303 Amo-Chr17 117071015 117071677 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2303 1 79 C2C2-Dof Transcription Factor Family AT3G50410 72.152 3.83e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Amo17g2303 zf-Dof 2.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2303 - - ahf:112786370 281.567