Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2209 ATGGCGGAGGAAGGAGTAGTGATTGGTTGCCACAGCGTGGATGAGTGGAAGGATCAGCTCAAGAAGGCAGAAGACTCCAACAAACTGGTTGTAGTGGATTTCACAGCTTCTTGGTGTGGGCCGTGCCGCTTCATTGCCCCAATTGTGGCGGAGTTTGCTAAGAAGTTCACAAATGTGGCGTTCCTGAAGGTGGATGTGGATGAATTGAAGACTGTGGCTGAGGAGTGGGGAATTGAGGCGATGCCAACCTTCCTCTTCATCAAACAAGGTAAATTAGTAGACAAGGTCGTTGGTGCTAAGAAGGATGAACTTCAATCCACTATCACCAAGCATGTTGCTGCTGCTGCTTGA 351 0.49 MAEEGVVIGCHSVDEWKDQLKKAEDSNKLVVVDFTASWCGPCRFIAPIVAEFAKKFTNVAFLKVDVDELKTVAEEWGIEAMPTFLFIKQGKLVDKVVGAKKDELQSTITKHVAAAA* 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2209 116 PRINTS Thioredoxin family signature 30 38 - -
Amo17g2209 116 PRINTS Thioredoxin family signature 38 47 - -
Amo17g2209 116 PRINTS Thioredoxin family signature 77 88 - -
Amo17g2209 116 CDD TRX_family 18 108 - -
Amo17g2209 116 PANTHER THIOREDOXIN 1 114 - -
Amo17g2209 116 PANTHER THIOREDOXIN 1 114 - -
Amo17g2209 116 TIGRFAM thioredoxin: thioredoxin 22 111 IPR005746 GO:0015035
Amo17g2209 116 Gene3D Glutaredoxin 1 115 - -
Amo17g2209 116 ProSitePatterns Thioredoxin family active site. 31 49 IPR017937 -
Amo17g2209 116 ProSiteProfiles Thioredoxin domain profile. 1 113 IPR013766 -
Amo17g2209 116 SUPERFAMILY Thioredoxin-like 8 113 IPR036249 -
Amo17g2209 116 Pfam Thioredoxin 11 109 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2209 Amo-Chr17 113227526 113228609 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2209 17 113227526 113228609 Amo17g2209 17 113227526 113228609 ECH
Amo08g0138 08 2516296 2517249 Amo17g2209 17 113227526 113228609 hybridization
Amo06g0714 06 10124333 10125036 Amo17g2209 17 113227526 113228609 PCT
Amo17g2209 17 113227526 113228609 Amo06g0714 06 10124333 10125036 PCT