Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2196 ATGGCTCGCCACTCACGCTGGACTCTCCTCCTGCTTCTCCTCTCTGCTGCCGTCGCGTCGGCGGTGATTGACGACGACGACAACATTCTGATCCGTCAAGTGGTGGAGGATGGCGATGAGCACTTGCTGAACGCGGAGCACCACTTCTCCGCCTTCAAGACCAAGTTCAGCAAGACGTACGCCACAAAAGAGGAGCACGACTATCGGTTTGGCGTGTTCAAGAGCAACTTGCTCCGAGCAAAGTCGCATCAGGAGCTGGACCCCTCCGCCATACACGGCGTCACAAAGTTCTCCGATCTCACTCCGTCAGAGTTCCGCAGCCAGTTCCTTGGCCTTAAACCTCTTAGCCTTCCCTCTGATGCTCACAACGCACCAATCCTCCCTACCGACAATCTCCCTAAAGACTTCAACTGGCGCGACCATGGAGCCGTCACTAACGTCAAGAACCAGGGCACGTGTGGGTCGTGTTGGTCCTTTAGCACCACAGGAGCGTTGGAAGGAGCTCATTTTCTGGCAACGGGTGAGCTAGTGAGCCTTAGTGAGCAACAGCTTGTGGATTGCGATCACGAGTGTGATCCAGACCTAAATGATGCATGTGACTCGGGCTGCAATGGGGGGTTGATGACCACTGCATTTGGGTACACAAAGAAGGCTGGTGGACTAGTACGAGAAGAGGACTATCCTTACACTGGAAGAGATCGTGGCCCTTGCAAATTTGACAAGAGCAAAATTGCTGCTTCTGTGTCCAATTTCAGTGTGGTTTCCCTAGATGAAGACCAAATTGCAGCAAACCTGGTGAAGAATGGTCCTCTTTCAGTTGGTATCAATGCAGTTTATATGCAGACATATATAGGAGGAGTCTCATGCCCATTAATCTGTGGCAAGCACTTGGATCATGGGGTTCTTCTAGTGGGCTATGGTGCTGGTGGTTATGCTCCCATTCGCTTTAAGGAAAAGCCTTATTGGATTATAAAGAACTCATGGGGTGAAAACTGGGGAGAGAATGGATATTACAAGATCTGCAGAGGTCACAATATGTGTGGGGTGGATTCCATGGTCTCAACTGTTACTGCTATTCGCACATCTAGCCATTAA 1095 0.5068 MARHSRWTLLLLLLSAAVASAVIDDDDNILIRQVVEDGDEHLLNAEHHFSAFKTKFSKTYATKEEHDYRFGVFKSNLLRAKSHQELDPSAIHGVTKFSDLTPSEFRSQFLGLKPLSLPSDAHNAPILPTDNLPKDFNWRDHGAVTNVKNQGTCGSCWSFSTTGALEGAHFLATGELVSLSEQQLVDCDHECDPDLNDACDSGCNGGLMTTAFGYTKKAGGLVREEDYPYTGRDRGPCKFDKSKIAASVSNFSVVSLDEDQIAANLVKNGPLSVGINAVYMQTYIGGVSCPLICGKHLDHGVLLVGYGAGGYAPIRFKEKPYWIIKNSWGENWGENGYYKICRGHNMCGVDSMVSTVTAIRTSSH* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2196 364 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 297 307 IPR025660 -
Amo17g2196 364 Gene3D Cysteine proteinases 23 357 - -
Amo17g2196 364 SMART pept_c1 132 357 IPR000668 GO:0006508|GO:0008234
Amo17g2196 364 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 321 340 IPR025661 -
Amo17g2196 364 CDD Peptidase_C1A 133 356 IPR039417 -
Amo17g2196 364 PANTHER CYSTEINE PROTEASE RD19C-RELATED 23 358 - -
Amo17g2196 364 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 23 358 - -
Amo17g2196 364 PRINTS Papain cysteine protease (C1) family signature 150 165 IPR000668 GO:0006508|GO:0008234
Amo17g2196 364 PRINTS Papain cysteine protease (C1) family signature 299 309 IPR000668 GO:0006508|GO:0008234
Amo17g2196 364 PRINTS Papain cysteine protease (C1) family signature 321 327 IPR000668 GO:0006508|GO:0008234
Amo17g2196 364 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 150 161 IPR000169 -
Amo17g2196 364 SUPERFAMILY Cysteine proteinases 46 356 IPR038765 -
Amo17g2196 364 SMART Inhibitor_I29_2 49 105 IPR013201 -
Amo17g2196 364 Pfam Cathepsin propeptide inhibitor domain (I29) 49 105 IPR013201 -
Amo17g2196 364 Pfam Papain family cysteine protease 132 355 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2196 Amo-Chr17 112791075 112793375 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2196 17 112791075 112793375 Amo17g2196 17 112791075 112793375 ECH
Amo06g0719 06 10240071 10242339 Amo17g2196 17 112791075 112793375 PCT
Amo17g2196 17 112791075 112793375 Amo06g0719 06 10240071 10242339 PCT