Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2194 ATGGCTGGGTTCTTCTCTCTAGGTGGAAGGGGAGCTGGCCCACACAGCAACAAGGAAGAAGAAGGAGAAAGAGTAGCAGAAAAACATCATCAAGACCATCACAACAGCAATAGCCTATTCTTGTTCAGGAACAACGAGGAGGTGTACAACAAAGGAGGATTCGAGATATGGCCGCAGCCCTACCACCAAAACCAAGGTTTCAGCAACTACTACTCGTTTGGGGTGGGTCCTAGTACTCATCAACATAGAAGGAACAACAACAACAACGACAACTCCAACAACAACTCCAACGACGAAGGCGTCTCCTTCTGTGTCTCGGATGAGTCGACGAGATTTGGACTGACGATGATGAGGTCCTCCGGTGGTGGTGGAGGCACGGGGAGCGGCGGCGGTGGCGGTGGCGTAAACTGCCAGGACTGCGGGAACCAAGCAAAGAAAGACTGTGCTCACCTGAGATGCAGGACTTGTTGTAAGAGCCGAGGGTTTCAGTGCCAAACCCACGTGAAGAGCACTTGGGTTCCCGCCGCAAAACGCCGTGAACGACAGCAACAACTCGCTGCCTTGCAGCAACAGCAATTGCACAGTGCAGACACTTCTTCTAAACGACACAGAGACACTCATCCAGCTCTTGACACTCTTCCTTGCGCTCCTCCTGTTCCCACCATCACCACCACAGGGTTGGAACTGGGTCAATTCCCTTCAGAAGTAAGCTCATCAGCGGTGTTTAGGTGTGTGAAAGTTAGCGCAATAGACAGTGTAGATGAACAGTATGCATATCAAACCGCTGTCAACATCGGAGGCCATGTTTTCAAGGGAATTCTCTACGATCAAGGTCCCCAAGGACTTTACACTACTGCCATTGTTGCCGAGGGTTCTTCCGCTGGAGGAGGAGCTGAACCTCAACAACAACTCAGCCTCATAACAGCTGCAACCACCACCGCTGGGAACCCCTTTGACCCTTCTTCGCTTTACCCGGCTCCACTCAACGCTTTCATGGCTGGTACGCAATTCTTCCCACCACCAAAGTCCTAA 1032 0.5174 MAGFFSLGGRGAGPHSNKEEEGERVAEKHHQDHHNSNSLFLFRNNEEVYNKGGFEIWPQPYHQNQGFSNYYSFGVGPSTHQHRRNNNNNDNSNNNSNDEGVSFCVSDESTRFGLTMMRSSGGGGGTGSGGGGGGVNCQDCGNQAKKDCAHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQQQLHSADTSSKRHRDTHPALDTLPCAPPVPTITTTGLELGQFPSEVSSSAVFRCVKVSAIDSVDEQYAYQTAVNIGGHVFKGILYDQGPQGLYTTAIVAEGSSAGGGAEPQQQLSLITAATTTAGNPFDPSSLYPAPLNAFMAGTQFFPPPKS* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2194 343 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 231 279 IPR006511 -
Amo17g2194 343 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 136 178 IPR006510 -
Amo17g2194 343 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 341 IPR007818 GO:0003700|GO:0006355
Amo17g2194 343 MobiDBLite consensus disorder prediction 72 101 - -
Amo17g2194 343 Pfam Domain of unknown function (DUF702) 134 280 - -
Amo17g2194 343 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 341 - -
Amo17g2194 343 MobiDBLite consensus disorder prediction 1 34 - -
Amo17g2194 343 MobiDBLite consensus disorder prediction 178 217 - -
Amo17g2194 343 MobiDBLite consensus disorder prediction 14 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2194 Amo-Chr17 112766598 112777868 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Amo17g2194 DUF702 1.7e-64 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2194 17 112766598 112777868 Amo17g2194 17 112766598 112777868 ECH
Amo08g0149 08 2658623 2660038 Amo17g2194 17 112766598 112777868 hybridization
Amo06g0720 06 10256326 10257552 Amo17g2194 17 112766598 112777868 PCT
Amo17g2194 17 112766598 112777868 Amo06g0720 06 10256326 10257552 PCT