Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2165 ATGGGTTCTGTTTCTCTGAAGATAGGCGATGGAACTGCGAGATTCCAGAGTGCCACTGTGTGTTCTTCAGCTGTCAACATCCTCATGATATTCTCCGTTATCACCACCAACCTCTTCGCACTCTACGCTTTCACCGCTTCCAACAAACACCACCAAAGCCAGCACCTTCTCCTCCAGCATGCTCACAAGAACTTCTCCCTCATCTCCGAGCAGGTCCAGCTCATACTCAACGAGATCGATTCCTCTCAGAAGAAGCTTGCCCAGATGGAGAAACAGCTTCTCGGTTACGATACCATCGATCTTTCAAGGCCCAACATTGCACCCGAGCTCAAACTCTTTCTCCAGCAACACCAGCTCCCTCTCGGCAAGGATTCCAAGACTGGAATCACTGAGATGGTGCCATCTGTTGGCCATTCCTGCGAGAAATCCTCCGACTTGTTGTCTCAGTACATGATTTACAAGGTTTATGGAAGCTGCCAAGATGATTGGATTTTGGCGCAGAAGCTTATCTTGCGTGCCTGTGAGCCTTTGCCTCGAAGAAGGTGTTTTGCTAAGTTCGTTTCCAAGGTCGGCCTTTATCCTTTTCCTGATTCACTTTGGAAACTTGTTGCTAATAAAACTGTTAACTGGAGTGGTCTTAGTTGTAAGAATTTTCAGTGTTTGAATGGGAAGAAGTTGAATAGAGAGTGTATTGGCTGTTTTGATTTGCTTAATGGTTATGAGAGTCAGAGGTTTATTAAGGCTAGGGGTAAGAATGACTTTCTCATTGATGATGTGTTGGAACTGGGAAGTGGTGGAATCAGAGTTGGGCTTGATCTTGGAGGTGGCTCTGGCTCCTTTGCCGCTAGAATGGCCGAAAGGAATGTAACTGTGATTACTAGTACTCTGAATGTTGATGCCCCTTTCAGCGAATTCATTGCGGCAAGGGGATTATTCCCTCTTTACTTGAGCTTAAATCATAGGTTCCCGTTCTATGATAATGTGTTTGACTTGGTCCATGCTGCAAGTTCCTTGGATGTTGGTGGGAAACCAGAGAAGTTAGAGTTTTTGATGTTCGACATTGATCGCATTTTGCGCCCAGATGGCTTGTTTTGGCTGGACAACTTCTATTGCACAAGCGATGAGAAGAAGAGAGAACTGACTCGGTTGATCGAAAAGTTTGGATATAAAAAGTTGAAATGGGTTGTGGGAGAGAAAATTGATAGTCTTGGATCAGGCAAGTCTGAAGTTGTCTTATCTGCTGTTCTTCAGAAGCCAGTAAGGGTGTAA 1269 0.4507 MGSVSLKIGDGTARFQSATVCSSAVNILMIFSVITTNLFALYAFTASNKHHQSQHLLLQHAHKNFSLISEQVQLILNEIDSSQKKLAQMEKQLLGYDTIDLSRPNIAPELKLFLQQHQLPLGKDSKTGITEMVPSVGHSCEKSSDLLSQYMIYKVYGSCQDDWILAQKLILRACEPLPRRRCFAKFVSKVGLYPFPDSLWKLVANKTVNWSGLSCKNFQCLNGKKLNRECIGCFDLLNGYESQRFIKARGKNDFLIDDVLELGSGGIRVGLDLGGGSGSFAARMAERNVTVITSTLNVDAPFSEFIAARGLFPLYLSLNHRFPFYDNVFDLVHAASSLDVGGKPEKLEFLMFDIDRILRPDGLFWLDNFYCTSDEKKRELTRLIEKFGYKKLKWVVGEKIDSLGSGKSEVVLSAVLQKPVRV* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2165 422 Coils Coil 72 92 - -
Amo17g2165 422 Gene3D Vaccinia Virus protein VP39 235 401 IPR029063 -
Amo17g2165 422 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 245 391 IPR029063 -
Amo17g2165 422 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN 1 422 - -
Amo17g2165 422 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 264 366 IPR004159 GO:0008168
Amo17g2165 422 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN-RELATED 1 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2165 Amo-Chr17 111498373 111499984 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2165 17 111498373 111499984 Amo17g2165 17 111498373 111499984 ECH
Amo08g0174 08 3019694 3021224 Amo17g2165 17 111498373 111499984 hybridization
Amo06g0737 06 10456245 10457991 Amo17g2165 17 111498373 111499984 PCT
Amo17g2165 17 111498373 111499984 Amo06g0737 06 10456245 10457991 PCT