Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g4164 TGTAGTGAATCAAAAATTCTAAAATGTTTTGGAAAAAAATTGTATGGAACTATGAATAAATGTTCTCACTTCTCACGGATCCATAATTTTTTATTACGTCCTTCTATTTATATTGACGACCCATTTTCATTACCGTCTCTTTGTTCATCAACGAACCCCATTTTCTCAGTTGTTAGGGTTTATAAAATAATTATTTTTGTTCCCAATTTCTATTCATTTTCATTTTCGTTATTGTGTTTCATAATTTCTAAATTTCGAGACGACCCATTTCTATTCATGACGTCCAATTTTGACCGGTGGGAGAAAGATCCTTTCTTTGAAGCTGCCGAAGAATTAGATGAATTCAATCGGGCAGTTAAGTCGAGCTATAGCAGAAGCTCAATTGAGGATACGAGAAATAGGCACCGCGATTTTGTTGCTGCCATTGATGAGAAGATCACAAAAGTAGCAAGTTTATCGGCATTTCTTAGTTCGATGGGATCCGTACCTGTGTTGAAGTGGCCTAGGAATGGTTATAGAAAGCTGAATCATAAAGAACCCGATAATGCGCTACTTCCAATGACCGAATTGAAAAAGGGCAACAAGGCATCCTTCGAAAAAAGTAAGAGTTGTCTTGAAAGTTCTGATGAATCTTATGACAAGCAACTTTATGGATGGTATGGTGCTATTCAGAGACAGATTCGAAGATCTCAATACCAAATGCGATACAGTCAACCAGTTCGAATAACAGTTTCCGTTGTTGTTCTCCTTTGCTTGATTGGTAAGTTCCACATTCATATAGACACAAGTCATCTCTTACCAATTACCATAGACTCTCTTGGTATTTTGTATGTGGAGGTCTTGGGAGCAGGTTCTTATGGCACTGTTTATCTTGGCATTCTTGTTGATGAACAAAAACGGTTTCATAGCTTCATTGCTGTGAAGAGCTCTATTCCCAAACTGGCATTCTCACTGAAGAAAGAGGAACAGATTTTTAAATCAGTTTGGGAAGGTGAAAGCAGTGGTTGCCAAGAAATCATTCAATGCTTTGGAACTGAAACCACAGTAGAGCATGGACGTTGCTTTTACAATCTTTTCTTGGAATATGCTCCTCACGGTTCTTTGGCTGACTTGATCCACAAGAAACCTCTTCCCGAGACCGAGGTGAGTGTCTATGCACGCATGATTGTTAAAGGGCTTTCGCATATTCATCGCAAAGGAATCGTCCACTGTGACCTCAAGCCGGAGAACATTCTTGTGTTTCCTTCATTGGATAAAGAGATTGCAAACTATCAATTGAAGATTGCGGATTTTGGATTATCGAAAACCAAAGAGGAGGAAGCAGATGTTGAGTTGTGGAAGTCCAAGCCGAGAGGTACGCCATTATACTTGTCACCGGAAGCGTTTTCTGGTCATATTGATGCTCCGATGGATATATGGGCACTTGGTTGCATAGTGATTGAAATGCTCACTGGATTGCCTGCCTGGGGTGAGAGCCCTTTGCTTATTGAGGAGTTGAGGTATTTGGTTGAGCATCATGAACTATCACCCAAGAAGCCGCAGGGAATCGGTTTTTTCTGTCATGATTTTCTGGATAAGTGCTTCATGAAGGATCCTAGCAAGAGATGGACTGCTGACAGGCTTCTTGATCATCCTTTCCTTTATATCACATTGGACCTCAAGAAGCGGAAGCGCGAGGAGCCTGTTGCTTCGGGGACTCTCAGGATCTGGAATCCTGAGTTCGTTGAAGAAGAAGATGAGGAAGGCGAGGGTGTGGTTGAGAAGAGGGTTTGGGAGTGGAGGAAGAGGTTGGTGGAGAAGATGAACGTGATTGAGCTGAATCTTGAAGGGGTTAAGTTCAAGCTTGATGTTGCTGTTCCCGATTCGGATGATTTTGAGGCAATGAAGAAAGATTGGGAACAGTTTTTTGCGTTTGATACTCGAGTACATCGAATTAGAGTCTCTTCGCAGATTAAGGACTAA 1962 0.4118 CSESKILKCFGKKLYGTMNKCSHFSRIHNFLLRPSIYIDDPFSLPSLCSSTNPIFSVVRVYKIIIFVPNFYSFSFSLLCFIISKFRDDPFLFMTSNFDRWEKDPFFEAAEELDEFNRAVKSSYSRSSIEDTRNRHRDFVAAIDEKITKVASLSAFLSSMGSVPVLKWPRNGYRKLNHKEPDNALLPMTELKKGNKASFEKSKSCLESSDESYDKQLYGWYGAIQRQIRRSQYQMRYSQPVRITVSVVVLLCLIGKFHIHIDTSHLLPITIDSLGILYVEVLGAGSYGTVYLGILVDEQKRFHSFIAVKSSIPKLAFSLKKEEQIFKSVWEGESSGCQEIIQCFGTETTVEHGRCFYNLFLEYAPHGSLADLIHKKPLPETEVSVYARMIVKGLSHIHRKGIVHCDLKPENILVFPSLDKEIANYQLKIADFGLSKTKEEEADVELWKSKPRGTPLYLSPEAFSGHIDAPMDIWALGCIVIEMLTGLPAWGESPLLIEELRYLVEHHELSPKKPQGIGFFCHDFLDKCFMKDPSKRWTADRLLDHPFLYITLDLKKRKREEPVASGTLRIWNPEFVEEEDEEGEGVVEKRVWEWRKRLVEKMNVIELNLEGVKFKLDVAVPDSDDFEAMKKDWEQFFAFDTRVHRIRVSSQIKD* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g4164 653 SMART serkin_6 275 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g4164 653 ProSitePatterns Protein kinases ATP-binding region signature. 281 308 IPR017441 GO:0005524
Amo16g4164 653 SUPERFAMILY Protein kinase-like (PK-like) 277 548 IPR011009 -
Amo16g4164 653 Pfam Protein kinase domain 279 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g4164 653 Gene3D Transferase(Phosphotransferase) domain 1 275 595 - -
Amo16g4164 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 401 413 IPR008271 GO:0004672|GO:0006468
Amo16g4164 653 ProSiteProfiles Protein kinase domain profile. 275 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g4164 653 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 278 555 - -
Amo16g4164 653 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 278 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g4164 Amo-Chr16 154296534 154306768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g4164 279 549 MAP Kinase Kinase Kinase AT4G36950 43.525 2.09e-61 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Amo16g4164 Pkinase 1.8e-47 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g4164 16 154296534 154306768 Amo16g4164 16 154296534 154306768 ECH
Amo16g4164 16 154296534 154306768 Amo17g2857 17 130649514 130652475 PCT
Amo17g2857 17 130649514 130652475 Amo16g4164 16 154296534 154306768 PCT