Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3992 ATGGACGATGAGCTTCTTGATGAAAAAGAACAAGAAGCCGAAGAAGAAGAAGAGAGTGTGGGCTCCAGCTTGACCATGGTCAAGGTCGCTGCTGCCAAAAAGTTCATCGAGAACCACTACAGAACCCACATGAAGAACATTCAAGACCGCAAGGAAAGACGTTGGGTTTTAGAAAGAAAATTAGCTTCTTCAGATGTGCCAGATGAGGAACGGATCAACCTCATCAAAGATTTAGAGAGAAAGGAGACAGAATATATGCGATTGAAAAGGCACAAGATATGTGTTGATGATTTTGAGCTCTTAACAATCATTGGAAGGGGGGCCTATGGAGAGGTTAGGCTGTGTCGGGAAAAAAAGTCTGGAAACATTTATGCCATGAAAAAGCTGAAGAAATCTGAAATGCTCAAGAAAGGCCAGGTGGAACATGTTAGAGCTGAGAGGAACTTGCTGGCTGAGGTAGCCAGTCATTGCATCGTGAAACTTTACTACTCATTTCAAGATGCCGAGTACTTGTATTTAATTATGGAGTATCTGCCTGGGGGTGATATGATGACTCTTCTAATTAGGGAAGAAACCTTAAGTGAAGATATTGCTAAATTTTACATTGCACAAAGTGTTCTAGCCATAGAGTCTATTCATAGGCATGGTTACATTCACAGAGATATAAAACCTGATAACCTACTCTTAGACAAAAATGGTCACATGAAGCTCTCAGATTTTGGCCTCTGTAAGCCTCTTGACTGTACCACCTTGTATACACTGCATGAAAATCAGGTCATGGATGACAGAAATTTAGCAGAGCCAATGGATATTGATGGATCTATTCCTGGCATGGATAAGCATACCAGTTGGAGAAATCCACGTGAGCAGCTTGAGCATTGGCAGATGAACAGGAGAAAGTTGGCCTTTTCTACAGTGGGAACACCAGACTACATTGCTCCCGAAGTACTTCTGAAGAAAGGATATGGAATGGAATGTGACTGGTGGTCACTGGGAGCAATAATGTATGAAATGCTAGTTGGTTACCCTCCATTTTACTCGGAAAACCCTATGACTACCTGCAGAAAGATTGTTCATTGGAGAAATTTCTTAAGGTTTTCAGAAGATGCACAGTTGTCTCCAGAAGCTAAGGATCTAATCTGCAGATTGATGTGTGATGTTGACCATAGGTTAGGTACTCGAGGGGCGCATGAAATCAAGGCTCATCCTTGGTTCAATGGTGTAGAGTGGGATAAACTGTATGAAATGGAGGCAGCATTCAAACCACAAGTTGTTGGAGAGCTAGATACTCAGAACTTCATGAAATTTGATGAAGTTGATCCACCAACAAACGAAAGGCTTGGATCAGGAACCTCCCGGAAGATGCCCAAAGATCTAAACTTTGTTGGTTACACTTACAAGAACTTCGACGCTGTAAAAGGGCTGTGTCAAGGAGAGTCCATGCAAGAAATTTCTTCTAAATGGCCAGTTGAGGAAACCGGATTGCAAATGCTTGCATCATCCGGTGATCCCATGTTACCATAG 1524 0.4226 MDDELLDEKEQEAEEEEESVGSSLTMVKVAAAKKFIENHYRTHMKNIQDRKERRWVLERKLASSDVPDEERINLIKDLERKETEYMRLKRHKICVDDFELLTIIGRGAYGEVRLCREKKSGNIYAMKKLKKSEMLKKGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLIREETLSEDIAKFYIAQSVLAIESIHRHGYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDCTTLYTLHENQVMDDRNLAEPMDIDGSIPGMDKHTSWRNPREQLEHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSENPMTTCRKIVHWRNFLRFSEDAQLSPEAKDLICRLMCDVDHRLGTRGAHEIKAHPWFNGVEWDKLYEMEAAFKPQVVGELDTQNFMKFDEVDPPTNERLGSGTSRKMPKDLNFVGYTYKNFDAVKGLCQGESMQEISSKWPVEETGLQMLASSGDPMLP* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3992 507 PANTHER SERINE/THREONINE-PROTEIN KINASE 19 486 - -
Amo16g3992 507 Gene3D Transferase(Phosphotransferase) domain 1 300 423 - -
Amo16g3992 507 Pfam Protein kinase domain 99 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g3992 507 Pfam Protein kinase domain 297 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g3992 507 Gene3D Phosphorylase Kinase; domain 1 76 181 - -
Amo16g3992 507 SMART serkin_6 98 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g3992 507 SUPERFAMILY Protein kinase-like (PK-like) 81 449 IPR011009 -
Amo16g3992 507 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Amo16g3992 507 PANTHER AGC (CAMP-DEPENDENT, CGMP-DEPENDENT AND PROTEIN KINASE C) KINASE FAMILY PROTEIN 19 486 - -
Amo16g3992 507 ProSiteProfiles Protein kinase domain profile. 98 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g3992 507 Pfam Protein kinase C terminal domain 426 466 IPR017892 GO:0004674|GO:0005524|GO:0006468
Amo16g3992 507 Gene3D Transferase(Phosphotransferase) domain 1 182 249 - -
Amo16g3992 507 SMART pkinase_C_6 406 468 IPR000961 GO:0004674|GO:0005524|GO:0006468
Amo16g3992 507 ProSitePatterns Protein kinases ATP-binding region signature. 104 127 IPR017441 GO:0005524
Amo16g3992 507 Gene3D Phosphorylase Kinase; domain 1 424 434 - -
Amo16g3992 507 MobiDBLite consensus disorder prediction 1 21 - -
Amo16g3992 507 ProSiteProfiles AGC-kinase C-terminal domain profile. 406 476 IPR000961 GO:0004674|GO:0005524|GO:0006468
Amo16g3992 507 MobiDBLite consensus disorder prediction 1 19 - -
Amo16g3992 507 CDD STKc_NDR_like 96 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3992 Amo-Chr16 151936215 151943869 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Amo16g3992 Pkinase 2.6e-43 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3992 16 151936215 151943869 Amo16g3992 16 151936215 151943869 ECH
Amo16g3992 16 151936215 151943869 Amo17g2944 17 131718234 131722294 ECH
Amo16g3992 16 151936215 151943869 Amo06g0880 06 12011858 12015748 hybridization
Amo16g3992 16 151936215 151943869 Amo08g0183 08 3150158 3152438 PCT
Amo16g3992 16 151936215 151943869 Amo17g2154 17 111083072 111085268 PCT
Amo08g0183 08 3150158 3152438 Amo16g3992 16 151936215 151943869 PCT
Amo17g2154 17 111083072 111085268 Amo16g3992 16 151936215 151943869 PCT