Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3990 ATGGATTCAGCTCTTGCAATCTTGAATAACACGAGTAGCATTAATCTAGTTAGCAAAGGAGTTGGAAGAAAAACGAGTTCTAGTTTCTGGGGTGAAAGTGCAAAAAAGGAGAGTTTGAATAGCAGGTTTTTCATTACTCAACCATGCAACATGAATTTGATGAACAAAAGAAAGTTGAAGCATGGCATTGCACATGCTGTATACACACCAGATATGAATTCCATGGTATACCCTAAAGTTATTTTTCAGAATCCAAAACCAAATCCAGAAAATGTAGCTGCCATAATTTTGGGTGGTGGTGCTGGAACTCGACTCTTTCCTCTAACTAGCACAAGAGCCAAACCCGCTGTTCCAATTGGAGGATGTTACAGACTCATAGACATTCCTATGAGCAATTGCATCAATAGTGGGGTTAAAAAAATATATGTTCTAACACAGTACAACTCTTTCTCCCTCAATGGCCATCTCTCTCGCACTTATAATTGTGGAAATGGAGTGTTCACTGGAACTGACTTTGTGGAGGTCTTGGCTGCTACTCAAACTCCTGGAGAAGCAGGAAAGGAATGGTTCCAAGGAACAGCTGATGCTGTGAGAAGATTTATATGGGTTTTTGAGGATGCCAAACACAAGAACATTGAGAATGTGTTAATACTTTCTGGTGATCATCTTTGCCGGATGGACTACATGAAATTTTTGGAGAGACATACTGAATCAAATGCTGATGTCACAATTGCTTGTGTACCAATGGATGAAAGTCGTGCATCAGATTATGAGCTGGTAAAAATTGATAGAATGGGACGGGTTAGGCAGTTTGCAGAAAAACCAAAAGGATCAGATTTGAAGGAAATGCAAGTTGATCCCAACATTCTAGGATTACCTGCAAAAGAAGCAAAGGAAAATCTTTACATGGCATCCATGGGAGTTTATGTATTTAGAACTGAAATTCTGCTGAAACTACTAAGATTGAGTTGTCCTTCTTGTAATGACTTGGGATCTGAAATCATCCCAACAGCAGTGAGGGATCACAAAGTCCAATCATATTTGTTTAGAGACTATTGGGAAGATATTGGAACTATAAAGTCCTTCTATGATGCAAATATGGCCTTAACAGAACAGCCTCCAAAATTTGAATTCTATGATCCAAAGACGCCTTTCTACACTTCCCCAAGATTCTTACCTCCCACTAAAGTACTAAAATCTAAGATCGTGGACGCAATTATTTCGCATGGTTGCTTTTTGAGTGAGTGTAACATTCAACGTTCAGTCATTGGCGTCCGCTCGTGTTTGGCGTCTGGTTCAGTTCTTGAGGATACAATGATGATGGGAGCAGACTACTATGAAACTGATTCTGAAATTGAATCTCTTGTAGCACGAGGAAAGGTCCCAATTGGTGTTGGAGAGAATACCAAAATCAGGAATTGCATAATCGACAAGAATGCCAGGATAGGAAGAGATGTGATTATTGCAAATTGTGATGGTGTACAAGAAGCAGACAAGCCAGAAGAAGGATTTTACATTAGGTCAGGCATCATAGTTGTAGTGAAGAATGCAACAATTAAGGATGGAACAGTTATCTAA 1578 0.3942 MDSALAILNNTSSINLVSKGVGRKTSSSFWGESAKKESLNSRFFITQPCNMNLMNKRKLKHGIAHAVYTPDMNSMVYPKVIFQNPKPNPENVAAIILGGGAGTRLFPLTSTRAKPAVPIGGCYRLIDIPMSNCINSGVKKIYVLTQYNSFSLNGHLSRTYNCGNGVFTGTDFVEVLAATQTPGEAGKEWFQGTADAVRRFIWVFEDAKHKNIENVLILSGDHLCRMDYMKFLERHTESNADVTIACVPMDESRASDYELVKIDRMGRVRQFAEKPKGSDLKEMQVDPNILGLPAKEAKENLYMASMGVYVFRTEILLKLLRLSCPSCNDLGSEIIPTAVRDHKVQSYLFRDYWEDIGTIKSFYDANMALTEQPPKFEFYDPKTPFYTSPRFLPPTKVLKSKIVDAIISHGCFLSECNIQRSVIGVRSCLASGSVLEDTMMMGADYYETDSEIESLVARGKVPIGVGENTKIRNCIIDKNARIGRDVIIANCDGVQEADKPEEGFYIRSGIIVVVKNATIKDGTVI* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3990 525 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 304 314 IPR005836 GO:0005978|GO:0008878
Amo16g3990 525 Gene3D Hexapeptide repeat proteins 391 525 - -
Amo16g3990 525 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 1 525 IPR011831 GO:0005978|GO:0008878
Amo16g3990 525 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 80 390 IPR029044 -
Amo16g3990 525 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 189 197 IPR005836 GO:0005978|GO:0008878
Amo16g3990 525 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE LARGE SUBUNIT 3, CHLOROPLASTIC 1 525 - -
Amo16g3990 525 CDD ADP_Glucose_PP 94 356 - -
Amo16g3990 525 CDD LbH_G1P_AT_C 393 519 - -
Amo16g3990 525 SUPERFAMILY Nucleotide-diphospho-sugar transferases 91 486 IPR029044 -
Amo16g3990 525 Pfam Nucleotidyl transferase 94 371 IPR005835 GO:0009058|GO:0016779
Amo16g3990 525 SUPERFAMILY Trimeric LpxA-like enzymes 387 525 IPR011004 -
Amo16g3990 525 TIGRFAM glgC: glucose-1-phosphate adenylyltransferase 92 489 IPR011831 GO:0005978|GO:0008878
Amo16g3990 525 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 98 117 IPR005836 GO:0005978|GO:0008878
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3990 Amo-Chr16 151880046 151885038 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3990 16 151880046 151885038 Amo16g3990 16 151880046 151885038 ECH
Amo16g3990 16 151880046 151885038 Amo08g0088 08 1834548 1838828 PCT
Amo08g0088 08 1834548 1838828 Amo16g3990 16 151880046 151885038 PCT