Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3985 ATGTTCAGAAACCAATACGACACCGATGTTACTACGTGGAGTCCGGCTGGGAGGCTCTTCCAGGTTGAATACGCAATGGAGGCAGTGAAGCAGGGTTCCGCCGCAATTGGCCTCCGATCCAAAACGCACGTCGTTTTAGCATGCGTCAACAAGGCCAACTCCGAGCTCTCTTCTCACCAGAAGAAGATCTTCAAAGTCGATGACCACATCGGCGTTGCCATCGCCGGACTCACCGCCGACGGCCGCGTTCTCTCGCGCTACATGCGCAACGAGTGCATCAACTATTCGTATACCTATGAGTCTCCTCTTCCCGTTGGACGACTCGTCGTTCAGCTCGCTGACAAGGCTCAGGTTTGCACCCAGCGGTCATGGAAGCGTCCTTATGGGGTTGGCCTCTTGGTCGGTGGACTGGATGAATCAGGAGCTCACCTCTATTATAACTGTCCAAGTGGAAACTATTTTGAATATCAGGCTTTTGCAATTGGTTCTCGCTCACAAGCCGCCAAGACATACTTGGAACGCAAGTTTGAGAACTTCATGAGCTCCTCACGCGAAGAACTGATTAAAGATGCACTTATTGCAACTAGAGAGTCTTTGCAAGGTGAAAAGCTCAGGAGCTCCGTATGCACTATTGCTGTGGTTGGAGTTGGTGAGCCGTTTCACATTTTGGATCAAGAGACTGTACAAAAGTTGATTGATGAATTTGAGATTGTTAGGGATGATGAACCTCCGGCTGAACCTCAGCCTGCAGCTGAGCAGGATGCTCCTGCAGATCAGGGTACCGGTGCTGATCAAGGTGCAGCCGCTGCAAGTCCAGATGTTGCTCCTATGGACATTTGA 840 0.5083 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLACVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRNECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVGGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERKFENFMSSSREELIKDALIATRESLQGEKLRSSVCTIAVVGVGEPFHILDQETVQKLIDEFEIVRDDEPPAEPQPAAEQDAPADQGTGADQGAAAASPDVAPMDI* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3985 279 ProSitePatterns Proteasome alpha-type subunits signature. 6 28 IPR000426 GO:0006511|GO:0019773
Amo16g3985 279 MobiDBLite consensus disorder prediction 238 279 - -
Amo16g3985 279 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 1 269 - -
Amo16g3985 279 Pfam Proteasome subunit 29 214 IPR001353 GO:0005839|GO:0051603
Amo16g3985 279 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 2 232 IPR029055 -
Amo16g3985 279 PANTHER PROTEASOME SUBUNIT ALPHA TYPE 1 269 - -
Amo16g3985 279 SMART Proteasome_A_N_2 6 28 IPR000426 GO:0006511|GO:0019773
Amo16g3985 279 Pfam Proteasome subunit A N-terminal signature 6 28 IPR000426 GO:0006511|GO:0019773
Amo16g3985 279 ProSiteProfiles Proteasome alpha-type subunit profile. 21 232 IPR023332 -
Amo16g3985 279 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 4 235 IPR029055 -
Amo16g3985 279 CDD proteasome_alpha_type_1 6 215 IPR035144 GO:0019773
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3985 Amo-Chr16 151805166 151808001 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3985 16 151805166 151808001 Amo16g3985 16 151805166 151808001 ECH
Amo16g3985 16 151805166 151808001 Amo06g0693 06 9829404 9831215 hybridization