Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3977 ATGATGAAGCCATTGAAGAATATTGTGAAGGAGCTCAAGGAGATTGGAGAAAGCATTAGCAACATGTATAGAAACAACAACAACAACAAGCATAATGCTCATCATCATCATCATCATCATCATAGGCATGGAAAATCACACATTGCACCCGAATGTTCATCACCAATATCATCATTATCATCATCACCATCACAATCATCATTATTATCAGTAACAGTACCAGCATGCTCTTCAGCCATGGCAGCAAGAGATCAGAGCAGATGGGCTAACTTGCCACCTGAGTTGCTGTTAGACATAATCAAAAGGGTGGAAGGAAGTGAAACTTCATGGCCTTCTAGAAGAGTGGTTGTGGCATGTGCCTCAGTTTGCAGAACTTGGAGACAGATAACAAAGGATGTGGTTAAGACACCAGAACAGTGTGGTTGGATCACTTTCCCTATATCTCTCAAGCAGCCTGGTCCAAGAGACACTCCAATACAGTGTTTTATTAAGAGAGAAAGGGCCTCTTCAACATATTGTTTATACCTTGGTCTCAGCCCTGCTCCTTCTGGTGATATGAGCAAACTACTACTGGCTGCAAAGAAGATTAGAAGGGCAACATGTACCGAATTCTTCATATCATTGGTCGCGGACGATTTCTCGCGAGCTAGCACTACTTACATCGGAAAACTAAGGTCTAATTTTCTTGGCACCAAGTTCATGATCTTGGATGGTCAGCCTTCACTCGATCCTTCTTTGCTTCAATCGAATTGCAAATCGCAGCAAAGAGTACACCTGAAACAGGTTCTTCCAAGAGTTGCTGCTTCTTCTTCTTCTGCTAACTATAATGTAGCAACAGTCTCTTACGAACTCAATGTTCTGAGAACAAGAGGGCCGAGGCGAATGCGATGTGCAATGCATTCAATCCCTGTATCATCAATCCAAGAAGGAGGAACTGCTCCAACTCCTTTAAATTTCACCAATTTCTTGAATGATCATGAATGTACTACTCTGTCTCTCTCCAAAGCGAAGAAGCCAGTAACTGAAACCGGGTCAGCTAGTACTCTCAGTACTCCAGAATCAAGCCATTGTGCAAGAGAACTTGTTTTGAAAAACAAGGCTCCTAGATGGCATGAGCAACTTCAATGTTGGTGCTTGAATTTCAAGGGCAGAGTCACAGTTGCGTCTGTTAAGAACTTTCAGCTTGTAGCAGCTGTAGAGCCTTCTCAAAATGTTTCGACTGCGGAACAAGAGAAAGTGATACTACAATTTGGAAAGATTGGGAAGGACATATTCACCATGGATTACCGGTATCCCCTTTCGGCCTTTCAAGCCTTCGCAATCTGTTTAAGCAGCTTCGACACCAAACCGGCTTGCGAATGA 1362 0.4295 MMKPLKNIVKELKEIGESISNMYRNNNNNKHNAHHHHHHHHRHGKSHIAPECSSPISSLSSSPSQSSLLSVTVPACSSAMAARDQSRWANLPPELLLDIIKRVEGSETSWPSRRVVVACASVCRTWRQITKDVVKTPEQCGWITFPISLKQPGPRDTPIQCFIKRERASSTYCLYLGLSPAPSGDMSKLLLAAKKIRRATCTEFFISLVADDFSRASTTYIGKLRSNFLGTKFMILDGQPSLDPSLLQSNCKSQQRVHLKQVLPRVAASSSSANYNVATVSYELNVLRTRGPRRMRCAMHSIPVSSIQEGGTAPTPLNFTNFLNDHECTTLSLSKAKKPVTETGSASTLSTPESSHCARELVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVEPSQNVSTAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3977 453 MobiDBLite consensus disorder prediction 22 59 - -
Amo16g3977 453 Pfam Tub family 149 448 IPR000007 -
Amo16g3977 453 ProSitePatterns Tub family signature 1. 381 394 IPR018066 -
Amo16g3977 453 Gene3D Tubby Protein; Chain A 146 453 IPR025659 -
Amo16g3977 453 MobiDBLite consensus disorder prediction 29 46 - -
Amo16g3977 453 Pfam F-box domain 88 135 IPR001810 GO:0005515
Amo16g3977 453 PANTHER TUBBY-RELATED 4 453 - -
Amo16g3977 453 PRINTS Tubby superfamily signature 204 220 IPR000007 -
Amo16g3977 453 PRINTS Tubby superfamily signature 274 301 IPR000007 -
Amo16g3977 453 PRINTS Tubby superfamily signature 363 380 IPR000007 -
Amo16g3977 453 PRINTS Tubby superfamily signature 381 397 IPR000007 -
Amo16g3977 453 PRINTS Tubby superfamily signature 410 429 IPR000007 -
Amo16g3977 453 PRINTS Tubby superfamily signature 431 453 IPR000007 -
Amo16g3977 453 SUPERFAMILY Tubby C-terminal domain-like 137 453 IPR025659 -
Amo16g3977 453 ProSitePatterns Tub family signature 2. 438 453 IPR018066 -
Amo16g3977 453 Gene3D - 82 134 - -
Amo16g3977 453 PANTHER TUBBY-LIKE F-BOX PROTEIN 4 453 - -
Amo16g3977 453 SUPERFAMILY F-box domain 81 132 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3977 Amo-Chr16 151720269 151725419 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Amo16g3977 Tub 5.1e-103 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3977 16 151720269 151725419 Amo16g3977 16 151720269 151725419 ECH